Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g472 ATGGCCCAGTGCATACCAGGCTTAAACCATCCCAAAACCCTCAGCGGCAACGTCTTGTCTTCCATATCCTACTGCAAAACAGGGCCAAGATGGATTAAATTCCTAACAATGTCAAGCCAACAGCACCAATCTCAGCAATTATCTCTTGATGCCTTAATCAGCAGTAATCGCAAAGAAGAGGTTATCGGCGCCGTTCGCCACTCGCTCTCCAATTGTCTCTCCGAAACGAACCTTCATCTCACAGTTCCCGCTCTTAAGTCTAAAACTAGAGGCAAGGTTAGAGATGTCTATGATGGCGGGGATTATCTAGTCCTTGTCACAACAGATCGCCAGAGTGCATTTGATAGAGTTCTTGCTTCTATTCCATTCAAAGGCCAGGTTCTTAATGAGACAAGTTTGTGGTGGTTTGATAAAACTCAGCACATAGCTCCAAATGCAGTTGTGTCGGCTCCTGATAAAAATGTCACAATTGCAAAGAAATGTTCAGTTTTTCCTGTTGAATTTGTTGTCAGAGGTTATGTGACTGGAAGTACTGATACATCATTATGGACTGTCTACAAGAATGGTGTCCGAAACTACTGTGGCAATGCCCTCCCAGATGGCATGGTAAAAAACCAAAAGCTTCCTGCAAATATACTCACACCTACAACCAAGGCTGCAGATCATGATGTCCCCATAGCTCCTGATGAGATAGTTAAACTTGGGTTGATGACTCAAGCTGACTATGATGAAGTGAGTAGGAAAGCATTAAGCTTATTTGAATACGGTCAGCATGTGGCTTTGGAACATGGCCTGATATTGGTAGACACAAAATATGAATTTGGAAAGGGATCTGATGGTACAGTTCTTTTGATTGACGAGGTCCATACTCCTGATTCAAGTAGATATTGGATTGCTAATTCTTATGAGGAACGCTTTAGGAACGGCATTGAACCTGAAAATGTTGACAAGGAGTTCTTGAGGTTGTGGTTCAGAGAGCACTGTAATCCATATGAGGATGAGGTTCTTCCTGATGCTCCCACGGAACTTGTTAGTGAATTGGCTTGGCGGTACGTTTTCTTGTATGAGACAATAACGAACTCAAAATTTGAGATACCATTGATGGAGGAACCTATACATGATCGAATCTCCCGGAATGTTTCCTTGGCACTGGCATCTCTGCAATAA 1167 42.84 MAQCIPGLNHPKTLSGNVLSSISYCKTGPRWIKFLTMSSQQHQSQQLSLDALISSNRKEEVIGAVRHSLSNCLSETNLHLTVPALKSKTRGKVRDVYDGGDYLVLVTTDRQSAFDRVLASIPFKGQVLNETSLWWFDKTQHIAPNAVVSAPDKNVTIAKKCSVFPVEFVVRGYVTGSTDTSLWTVYKNGVRNYCGNALPDGMVKNQKLPANILTPTTKAADHDVPIAPDEIVKLGLMTQADYDEVSRKALSLFEYGQHVALEHGLILVDTKYEFGKGSDGTVLLIDEVHTPDSSRYWIANSYEERFRNGIEPENVDKEFLRLWFREHCNPYEDEVLPDAPTELVSELAWRYVFLYETITNSKFEIPLMEEPIHDRISRNVSLALASLQ* 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5247448 5263653 - Vvi18g472 Vvi18g472 780175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g472 388 Gene3D Phosphorylase Kinase; domain 1 75 164 - -
Vvi18g472 388 SUPERFAMILY SAICAR synthase-like 79 363 - -
Vvi18g472 388 ProSitePatterns SAICAR synthetase signature 2. 267 275 IPR018236 GO:0004639|GO:0006164
Vvi18g472 388 Gene3D - 165 308 - -
Vvi18g472 388 Hamap Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 85 360 IPR028923 -
Vvi18g472 388 CDD SAICAR_synt_Sc 90 359 - -
Vvi18g472 388 ProSitePatterns SAICAR synthetase signature 1. 163 177 IPR018236 GO:0004639|GO:0006164
Vvi18g472 388 PANTHER PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE 18 387 - -
Vvi18g472 388 Pfam SAICAR synthetase 89 334 IPR028923 -
Vvi18g472 388 PANTHER BNAC03G41880D PROTEIN 18 387 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g472 K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] - vvi:100250537 780.785
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g472 . . . . . . . . Cmo05g00551 . . . . . Sed04g0177 . . Bhi04g00801 Tan02g2438 Cmetu03g0642 . Hepe10g0459 . Lcy13g1509 Cla08g01141 Cam08g1600 Cec08g1171 Cco08g1298 Clacu08g1300 . Cre08g1083 . . Cone17ag1194 . . . . Cme03g01831 Blo17g00106 . . . . Bpe14g00472 . Bma02g00124 . . . . Cma05g00522 Car05g00473 . . . . . . . . . . . . . . . . . Lsi08g00999 Csa02g02183 Chy03g01334 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011405 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 3 1 31