Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g475 ATGGGAAGCGAGGGTGGCGTAGCCATGAGGAAGCCCAGATTTCTATGCCTCCATGGCTTTCGAACCAGCGCTGATATTCTCCAGAAACAGGTCGGAAAGTGGCCGGAGTCGGTTCTCGGACAAGTCGACCTCGTCTTCGCCGATGCCCCTTTTCCCTCGAATGGAAAATCTGATGTTGAAGGAATCTTCGACCCTCCTTATTACGAGTGGTTCCAATTCAATAAGGAGTTTACGGAGTACACGAACTTCGATGAGTGTCTTGCGTACATTGAAGATTATATGATAAAGCACGGTCCGTTTGACGGGCTCTTGGGTTTCTCGCAGGGGGCAATATTATCAGCTGCTCTACCAGGGCTACAAGCTAAGGGTTTGGCCCTCACAAAGGTTCCTAAAATAAATTTTCTTATAATTATTGGTGGAGCAAAACTGAAATCACCATCACTAGCTGAGAAAGCATATTCATCTACAATTCAGTGCCAATCTATCCACTTTTTAGGAGAGACTGACTTCTTAAGGCAGTATGGGATTGAACTCCTGGAGTCATTCGTAGACCCTTTGGTGATTCATCATCCCAAGGGCCACACAGTACCTAGACTTGATGAGAAGAGTCTGCAAATCATGCTTGGCTTCCTTGAAAGGATTCAAAAGATGCTGCCAGAGAAGGAAGAAGAAGTGTGCTAA 681 45.96 MGSEGGVAMRKPRFLCLHGFRTSADILQKQVGKWPESVLGQVDLVFADAPFPSNGKSDVEGIFDPPYYEWFQFNKEFTEYTNFDECLAYIEDYMIKHGPFDGLLGFSQGAILSAALPGLQAKGLALTKVPKINFLIIIGGAKLKSPSLAEKAYSSTIQCQSIHFLGETDFLRQYGIELLESFVDPLVIHHPKGHTVPRLDEKSLQIMLGFLERIQKMLPEKEEEVC* 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5290464 5293634 + Vvi18g475 Vvi18g475 780178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g475 226 Gene3D alpha/beta hydrolase 7 217 IPR029058 -
Vvi18g475 226 SUPERFAMILY alpha/beta-Hydrolases 11 197 IPR029058 -
Vvi18g475 226 Pfam Serine hydrolase (FSH1) 10 202 IPR005645 -
Vvi18g475 226 PANTHER ESTERASE OVCA2 6 224 - -
Vvi18g475 226 PANTHER DIHYDROFOLATE REDUCTASE 6 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g475 - - - vvi:100265992 462.996
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g475 . . . . . . . . Cmo05g00553 . . . . . . . . Bhi04g00803 Tan02g2441 . . Hepe10g0454 . Lcy13g1507 Cla08g01143 Cam08g1603 Cec08g1174 Cco08g1300 Clacu08g1302 . Cre08g1086 . . . . . . . Cme03g01830 Blo17g00105 . . Bda13g01372 . Bpe14g00474 . Bma02g00122 . . . . Cma05g00524 Car05g00474 . Cpe11g00463 . . . . . . . . . . . . . . . Lsi08g01001 Csa02g02185 Chy03g01333 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000767 4 3 2 2 4 4 2 3 4 3 3 3 3 3 3 4 3 3 2 4 3 1 3 4 2 3 3 3 4 3 91