Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g479 ATGGCGTCGATGCTAGCAGCCAATGGAGCAAAGACACCGGCTATAACCGGTAAACCCAAGGCCAAGAAATGGGGATGGGTTGAGGGCAAGAGAGGACACAATCTCTCATTCAGAAATGGGAAGCATATGAAAACCTTTCAAGTAGAGAAAGTGGAGACAGAAATGGAATTCGAGGAACACGAAGAACAGGAGGAAGATATGGGGATGGCTGTACAGGCCAGCTATGAATCGGTTGGAAACACGGGCAGGCCCAAAATGGGTAGCGGTGGAGGGGAAGGTGCATCCACCGTCAGAAAAGTCGGGAACAGCAGGTATAGGGAGTGCTTGAAGAATCACGCCGTTGGCATCGGCGGCCACGCTGTAGATGGCTGCGGCGAGTTCATGCCTGCCGGAGACGAAGGAACCCTTGATGGGCTACGGTGCGCCGCGTGCAATTGTCATCGCAACTTCCACCGCAAGGAGAGTGAGGGAGACACTTTATACCACCAATTCTCGCCTTATTACCGAACTCCGGCGGGATACCTCCACGTGGCGCCGTCGCATTTGAAGAAGAGATTTAGGACCAAGTTCACGCAGGAGCAGAAGGACAAGATGCTGGCGTTTGCGGAGACGCTGGGGTGGAGGATCCAGAAGCACGACGAAGCTGCTGTGCAGCAGTTCTGTCAAGAGACCTGTGTGAAACGCCATGTTCTCAAGGTCTGGATGCACAATAACAAGCACACCCTTGGTAAGAAACCCTAA 741 53.31 MASMLAANGAKTPAITGKPKAKKWGWVEGKRGHNLSFRNGKHMKTFQVEKVETEMEFEEHEEQEEDMGMAVQASYESVGNTGRPKMGSGGGEGASTVRKVGNSRYRECLKNHAVGIGGHAVDGCGEFMPAGDEGTLDGLRCAACNCHRNFHRKESEGDTLYHQFSPYYRTPAGYLHVAPSHLKKRFRTKFTQEQKDKMLAFAETLGWRIQKHDEAAVQQFCQETCVKRHVLKVWMHNNKHTLGKKP* 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5343383 5344522 + Vvi18g479 Vvi18g479 780182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g479 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 183 245 - -
Vvi18g479 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 84 158 - -
Vvi18g479 246 Coils Coil 43 63 - -
Vvi18g479 246 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 105 154 IPR006456 -
Vvi18g479 246 Gene3D - 176 244 - -
Vvi18g479 246 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 104 154 IPR006456 -
Vvi18g479 246 Pfam ZF-HD protein dimerisation region 103 155 IPR006456 -
Vvi18g479 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 84 158 - -
Vvi18g479 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 183 245 - -
Vvi18g479 246 SUPERFAMILY Homeodomain-like 178 244 IPR009057 -
Vvi18g479 246 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 183 239 IPR006455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g479 - - - vvi:100248818 380.178
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g479 . Blo12g00721 . . Bpe02g00132 . . Bma01g02594 Cmo05g00555 . . . . . Sed04g0182 . . Bhi04g00810 Tan02g2444 Cmetu03g1591 . Hepe10g0451 . Lcy13g1504 . . . . . . . . . Cone17ag1192 . . . . Cme03g01827 . . Bda11g00787 . . . . . . . . . Cma05g00527 Car05g00476 . Cpe11g00465 . . . . . . . . . . . . . . . Lsi08g01003 Csa02g02187 Chy03g01330 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi18g479 . 104 246 ZF-HD Transcription Factor Family AT5G65410 50.8 2.9e-44 176.0
Vvi18g479 . 55 242 ZF-HD Transcription Factor Family AT4G24660 53.0 1.6e-53 206.5
Vvi18g953 ECH 131 277 ZF-HD Transcription Factor Family AT4G24660 54.0 2.2e-45 179.5
Vvi18g1498 . 59 236 ZF-HD Transcription Factor Family AT4G24660 52.4 5.3e-44 174.9
Vvi4g980 ECH 89 282 ZF-HD Transcription Factor Family AT1G14440 51.0 1.1e-47 187.6
Vvi4g980 ECH 65 284 ZF-HD Transcription Factor Family AT2G18350 51.4 1.1e-50 197.2
Vvi14g1541 . 10 191 ZF-HD Transcription Factor Family AT3G28920 50.4 2.4e-55 213.0
Vvi14g1541 . 54 188 ZF-HD Transcription Factor Family AT1G69600 52.4 4.3e-44 175.3
Vvi18g479 . 55 242 ZF-HD Transcription Factor Family AT4G24660 53.0 1.6e-53 206.5
Vvi18g953 ECH 131 277 ZF-HD Transcription Factor Family AT4G24660 54.0 2.2e-45 179.5
Vvi18g1498 . 59 236 ZF-HD Transcription Factor Family AT4G24660 52.4 5.3e-44 174.9
Vvi4g980 ECH 65 284 ZF-HD Transcription Factor Family AT2G18350 51.4 1.1e-50 197.2
Vvi18g479 . 104 246 ZF-HD Transcription Factor Family AT5G65410 50.8 2.9e-44 176.0
Vvi14g1541 . 54 188 ZF-HD Transcription Factor Family AT1G69600 52.4 4.3e-44 175.3
Vvi4g980 ECH 89 282 ZF-HD Transcription Factor Family AT1G14440 51.0 1.1e-47 187.6
Vvi14g1541 . 10 191 ZF-HD Transcription Factor Family AT3G28920 50.4 2.4e-55 213.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14332 PF04770 ZF-HD_dimer 7.60E-29 No_clan Vvi TF