Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g479 ATGGCGTCGATGCTAGCAGCCAATGGAGCAAAGACACCGGCTATAACCGGTAAACCCAAGGCCAAGAAATGGGGATGGGTTGAGGGCAAGAGAGGACACAATCTCTCATTCAGAAATGGGAAGCATATGAAAACCTTTCAAGTAGAGAAAGTGGAGACAGAAATGGAATTCGAGGAACACGAAGAACAGGAGGAAGATATGGGGATGGCTGTACAGGCCAGCTATGAATCGGTTGGAAACACGGGCAGGCCCAAAATGGGTAGCGGTGGAGGGGAAGGTGCATCCACCGTCAGAAAAGTCGGGAACAGCAGGTATAGGGAGTGCTTGAAGAATCACGCCGTTGGCATCGGCGGCCACGCTGTAGATGGCTGCGGCGAGTTCATGCCTGCCGGAGACGAAGGAACCCTTGATGGGCTACGGTGCGCCGCGTGCAATTGTCATCGCAACTTCCACCGCAAGGAGAGTGAGGGAGACACTTTATACCACCAATTCTCGCCTTATTACCGAACTCCGGCGGGATACCTCCACGTGGCGCCGTCGCATTTGAAGAAGAGATTTAGGACCAAGTTCACGCAGGAGCAGAAGGACAAGATGCTGGCGTTTGCGGAGACGCTGGGGTGGAGGATCCAGAAGCACGACGAAGCTGCTGTGCAGCAGTTCTGTCAAGAGACCTGTGTGAAACGCCATGTTCTCAAGGTCTGGATGCACAATAACAAGCACACCCTTGGTAAGAAACCCTAA 741 53.31 MASMLAANGAKTPAITGKPKAKKWGWVEGKRGHNLSFRNGKHMKTFQVEKVETEMEFEEHEEQEEDMGMAVQASYESVGNTGRPKMGSGGGEGASTVRKVGNSRYRECLKNHAVGIGGHAVDGCGEFMPAGDEGTLDGLRCAACNCHRNFHRKESEGDTLYHQFSPYYRTPAGYLHVAPSHLKKRFRTKFTQEQKDKMLAFAETLGWRIQKHDEAAVQQFCQETCVKRHVLKVWMHNNKHTLGKKP* 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5343383 5344522 + Vvi18g479 Vvi18g479 780182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g479 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 183 245 - -
Vvi18g479 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 84 158 - -
Vvi18g479 246 Coils Coil 43 63 - -
Vvi18g479 246 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 105 154 IPR006456 -
Vvi18g479 246 Gene3D - 176 244 - -
Vvi18g479 246 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 104 154 IPR006456 -
Vvi18g479 246 Pfam ZF-HD protein dimerisation region 103 155 IPR006456 -
Vvi18g479 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 84 158 - -
Vvi18g479 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 183 245 - -
Vvi18g479 246 SUPERFAMILY Homeodomain-like 178 244 IPR009057 -
Vvi18g479 246 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 183 239 IPR006455 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14332 PF04770 ZF-HD_dimer 7.60E-29 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g479 - - vvi:100248818 380.178