Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g480 ATGGGCTACCTCTCTTGCAATGCAGAGTCCGCAATAGCTACATGCGACCCCTACATCTGGGACAACAAACGGAAACCCTTTCAGATTACCAACTTCTCCTATGCTGATCTTGAATCCGCCACCAATGGCTTCTCCGCTGAGAGTTTTCTCGGTAAAGGCAGCTATGGCAGCGTTTACAGAGCCCTTCTCCACCACGGTAAGCTCATCGCCGCCGTCAAGAGAGCCATAGGCCCTCAGCAACACAATAACAATCCGGCTGATAACGAGATCGAGATACTGTCGAGAGTTCGAAATCCTAGACTGGTGAATCTATTAGGCTTCAGTGTGGACAGGAACGAGAAGAAATTGATTGTGGTTGAGTTCATGCCCAATGGGTCTTTGTATGATATTCTTCATTCGAGTCCTAGACCACCCAGTTGGAGGCGGCGAGTCAGGTGGGCCTCGCAGATCGCGAAGGCGGTGGAGTCGCTGCACTCGTCGAATCCGCCGGTGATTCACAGAGACATAAAGTCTTCCAACGTTTTGCTGGATGGGAAATGGAATGCAAGGCTTGGAGACTTTGGGCTGGCTTTGAGGGGACACGTGGAGGATGTGAGGGTGAGGTGTACGCCACCCGCGGGGACGTTAGGATACCTGGACCCGGGCTATCTTGCGCCGGGGGATTTGAGTACCAAGAGCGACGTCTTCAGCTTTGGGATCTTGTTGCTGGAGATGATCAGCGGCCGCAACGCCATCGACGTCAACTACAGTCCACCCTCGGTGGTGGACTGGGCCGTGCCCTTGATCAAGCACACCAACTTCTCCGCAATCTGTGATCCCCGCATCGGAGAGCCGGAGGATCCTCGCGTGATCCGGCAGCTGGCGGTGTTGGCCGCTCGATGTGTCAGATCAACGGCGGAGAAGAGGCCTGCGGCGACTGAGGTGGTGGACTGCCTCAGAAACGTGAGAAAGATGGTTCAGTCGCCGCCGATCTGGGGTAATGTAAGGAGGCGAGTGCAGAGGCCGTCGAGGTCCCGGCAGATGACACTGGAGGTGTTGGATGGGAGCGGAGAGATGGTGAAGACGAAGAAACTTGGAAGCAGAAGGAACAGGAAGGTATCCAGTGTTCCGGGTGCAGAGGAGGGGAATGAAGCGGTTGGTTCGTTGAGTGATGGTGTGATTAGATCCAAATCAATTGGTTCGGGCAGCGAGATTAAAATGGGTTGGGATCCAAAGAAGAAGCCTGGATTGGTTGTGAAGATGCCTGTTATGAGGCTTGTGAAATCAAGGTCCATGGGGGTCGTACAATCCAAGCGCTTGCTACATTGCCATCAATTTGCCTTTGAACTTGACAAAAGGGCTCATGCATTCAGAGAATTGAGTGAACCCAAGTTGCATTGGTTAAATCATTGGTACAATAATTTAACAATTTCCAAATCTGTGAAGGTTCAACCATGA 1437 52.54 MGYLSCNAESAIATCDPYIWDNKRKPFQITNFSYADLESATNGFSAESFLGKGSYGSVYRALLHHGKLIAAVKRAIGPQQHNNNPADNEIEILSRVRNPRLVNLLGFSVDRNEKKLIVVEFMPNGSLYDILHSSPRPPSWRRRVRWASQIAKAVESLHSSNPPVIHRDIKSSNVLLDGKWNARLGDFGLALRGHVEDVRVRCTPPAGTLGYLDPGYLAPGDLSTKSDVFSFGILLLEMISGRNAIDVNYSPPSVVDWAVPLIKHTNFSAICDPRIGEPEDPRVIRQLAVLAARCVRSTAEKRPAATEVVDCLRNVRKMVQSPPIWGNVRRRVQRPSRSRQMTLEVLDGSGEMVKTKKLGSRRNRKVSSVPGAEEGNEAVGSLSDGVIRSKSIGSGSEIKMGWDPKKKPGLVVKMPVMRLVKSRSMGVVQSKRLLHCHQFAFELDKRAHAFRELSEPKLHWLNHWYNNLTISKSVKVQP* 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5350193 5352136 - Vvi18g480 Vvi18g480 780183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g480 478 Gene3D Phosphorylase Kinase; domain 1 28 121 - -
Vvi18g480 478 ProSiteProfiles Protein kinase domain profile. 44 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g480 478 PANTHER - 1 438 - -
Vvi18g480 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Vvi18g480 478 SUPERFAMILY Protein kinase-like (PK-like) 28 330 IPR011009 -
Vvi18g480 478 SMART serkin_6 44 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g480 478 Gene3D Transferase(Phosphotransferase) domain 1 122 323 - -
Vvi18g480 478 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Vvi18g480 478 MobiDBLite consensus disorder prediction 358 377 - -
Vvi18g480 478 Pfam Protein kinase domain 46 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g480 478 PANTHER OS01G0750732 PROTEIN 1 438 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g480 - - - vvi:100253910 893.649
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g480 . . Bda01g00901 . . . . . . . . . . . . . . Bhi04g00811 . . . . . Lcy13g1503 Cla08g01146 . . . . . . . . Cone17ag1191 . . . . Cme03g01826 . . Bda11g00788 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01004 Csa02g02188 Chy03g01329 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012718 2 1 0 0 0 0 1 0 0 1 1 0 1 1 0 1 0 1 1 0 1 0 0 0 0 1 1 1 0 1 16
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76375 PF00069 Pkinase 2.80E-38 CL0016 Vvi PK