Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g481 ATGGATGCAGGATCTTTTTATTCTCCTACTTTTGAACCTTTACTTGATATTTCCTTTTCCATTATGACTCCTTCATATATATTATTTATTTATTTTATACTCCCTTCCATGATTTCATTCTTAGTTGGAACTTGTGATTCACTTAGACTGGAAGAAGAATTTTCTCTGTTCTTGAATCCTGTTATTGAAAGAACTCTCAGTCATGAAGCTAGGGAGGCATTCCTCTCAGCCTTAGTTTTAGAAGGACGTGCTGAATGGATGGATAAAGGACATAAAAAATGTCTTATTCTCTGGCATCAGATTCAAGATTGGGCTGACATCATTTTGCACTTTGTGAGAGATTATGGGTCGGAGGACAGTGTTATGACAGGAAATGCGGTCAGGAACTGA 390 36.92 MDAGSFYSPTFEPLLDISFSIMTPSYILFIYFILPSMISFLVGTCDSLRLEEEFSLFLNPVIERTLSHEAREAFLSALVLEGRAEWMDKGHKKCLILWHQIQDWADIILHFVRDYGSEDSVMTGNAVRN* 130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5354042 5361249 - Vvi18g481 Vvi18g481 780184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g481 129 Pfam ESCRT-II complex subunit 51 123 IPR008570 GO:0000814|GO:0071985
Vvi18g481 129 PANTHER VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 25 44 128 - -
Vvi18g481 129 Gene3D - 31 98 IPR014041 -
Vvi18g481 129 SUPERFAMILY Winged helix DNA-binding domain 51 104 IPR036390 -
Vvi18g481 129 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25 44 128 IPR008570 GO:0000814|GO:0071985
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g481 K12189 VPS25, EAP20; ESCRT-II complex subunit VPS25 - vvi:100264410 137.502
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g481 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0542 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008628 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 2 2 33