Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g482 ATGGAGACAACCAATTTTCACGATAGCAACCTCTATAATTTCGTTGACGGCAGAAGCATCGATTTTCGCCATGATGTTAGTCGCAGTTTGCAAATGCACTCATCACTGTTACGACGGCTCACCCAGGAGGGAGAATTGGAGGGGCACCAGGGTTGTGTGAACACTGTGGCCTGGAACTCAAGAGGCTCACTTTTGATATCTGGATCTGATGACACAAGGATTAATATTTGGAACTATCCAAGCCGCAAGCTTTTGCATTGCATAGAGACTGGGCATTCTGCTAATATATTCTGCGCAAAATTTATCCCTGAAACTTCTGATGAGCTTGTCGCCTCTGGAGCCGGAGATGCAGAAGTTCGGCTGTTTCATTTGTCTCGCTTAAGTGGGAGAGGACCAGATGAGAATGCTATTACCCCATCTGCACTGTTTCAGTGTCACACTAGGAGAGTAAAAAAATTAGCTGTGGAAGTTGGAAACCCTAATGTGGTATGGAGTGCAAGTGAAGATGGAACCTTGAGGCAGCATGACTTTCGGGAGGGTGCTTCCTGTCCCCCAGCTGGGTCTTCTCACCAAGAGTGTCGGAATGTTCTGCTTGACTTACGGTGTGGAGCAAAGAAATCGCTAGCTGATCCTCCCAAACAATGCCTTAGTTTAAAATCATGTGATATCAGTTCCACTAGGCCTCATTTGCTCCTTGTTGGTGGCAGTGATGCATTTGCTCGTTTATATGATAGAAGGATGCTGCCGCCACTGACATCCTGCGGGAAAACGATGACACCACCTCCTTGTGTTAACTATTTCTGCCCAATGCATCTTTCTGATCATGGCCGGTCAAGCTTGCACCTTACCCATGTTACATTTAGTCCAAATGGAGAAGAGGTTCTCATTAGTTATAGTGCAGAGCATGTTTACTTAATGGATGTAAATCATGCCTGTGGAAGCACCGTGTGTTACGCTCCAGGAGATGCTTTAAAGCTAATGAACCCTAGTCCTATACTGGATGGGATAGGATTTGGATCACCAGTGTCTGATGCATTCACATATGATTTTTCCATGAAAAGCAATATTGCTGCTAAGCTTGACAAGTGCAGGAAACTGGTTCAATTTGCAGAAAGATGCTTAAAGGAGGGGACAGATTATTTCTATGGAATTGAGGCTTGTAATGAAGTTTTGGATGGACATCCTCATGAGATTGGGCCTACACTAAAGCATGATTGCTTGTGTACACGTGCTGCGTTACTCCTCAAGCGGAAGTGGAAAAATGATGCTCATATGGCTATAAGAGATTGCAATAGAGCTCGGAGAATTGACACTTCTTCTTTTAAGGCACTCTTCTACATGTCTGAAGCTTTATTGCAGCTGAACAAACATAAAGAAGCTCTGGAATTTGCTGTTGCATCTCAATGTTTGGCCCCTTATGATTCTGAAGTGGCAGAAAGAGTGGAGGATATAAAAAAGCATCTTGCTGCAGCCGAAGCTGAGAAAAGTAACAAGTCAAATGATGGAGTACCTAGGTCTGAAACTAGATCTGGAAGATTTCTATCATTGAGTGAAATACTCTACAGATCAGAGGCAAATAGTGATGCTTCACAAGACGGGCCAAGATCTGAAAGAGAAGATTCTGATTATGATGAGGAATTAGAGTTGGACTTTGAAACATCGGTATCAGGTGATGAAGGACGAGATGTTGAATCTAACATTCTTCATGGAAGTTTAAACTTGAGAATTCATCGAAGATGTGATTCAGCTAGAGAAACAAGTGGTACAAATGGTGCATGTGGATCTCCTACATCATCAAGAAATGATAAAACAACTTACCAGCCTGAGACAGCGATTGACATGAAACAGAGATATGTTGGTCACTGCAATATAGGAACTGATATAAAACAGGCTAGTTTTCTTGGCTGTAGAGGTGAATATGTTGCCAGTGGAAGTGATGATGGAAGATGGTTTATCTGGGACAAGAGAACTGGTAGACTAATAAAAATGCTTATGGGAGATGAACATGTCGTGAACTGTGTGCAGTGTCATCCATTTGATTGTACTGTAGCCACCAGTGGGATTGATAACACAATAAAGATATGGACTCCAAGTGCTCCTATCCCATCCATTGTAGCTGGGGGAGCTGCAGGACCAGAGACAGCAGATGTGTTGGAAGCTATGGAGAACAATCAACGGAAATTATGCCGAAACCGTGATGCGATCCTGCCCTTTGAGCTTCTGGAGCGTTTCCGAATGCATGATTTCGGTGAAGGAACCTTGCATCCATTTGAGTGCTCTCAGAGCTAA 2289 43.47 METTNFHDSNLYNFVDGRSIDFRHDVSRSLQMHSSLLRRLTQEGELEGHQGCVNTVAWNSRGSLLISGSDDTRINIWNYPSRKLLHCIETGHSANIFCAKFIPETSDELVASGAGDAEVRLFHLSRLSGRGPDENAITPSALFQCHTRRVKKLAVEVGNPNVVWSASEDGTLRQHDFREGASCPPAGSSHQECRNVLLDLRCGAKKSLADPPKQCLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCGKTMTPPPCVNYFCPMHLSDHGRSSLHLTHVTFSPNGEEVLISYSAEHVYLMDVNHACGSTVCYAPGDALKLMNPSPILDGIGFGSPVSDAFTYDFSMKSNIAAKLDKCRKLVQFAERCLKEGTDYFYGIEACNEVLDGHPHEIGPTLKHDCLCTRAALLLKRKWKNDAHMAIRDCNRARRIDTSSFKALFYMSEALLQLNKHKEALEFAVASQCLAPYDSEVAERVEDIKKHLAAAEAEKSNKSNDGVPRSETRSGRFLSLSEILYRSEANSDASQDGPRSEREDSDYDEELELDFETSVSGDEGRDVESNILHGSLNLRIHRRCDSARETSGTNGACGSPTSSRNDKTTYQPETAIDMKQRYVGHCNIGTDIKQASFLGCRGEYVASGSDDGRWFIWDKRTGRLIKMLMGDEHVVNCVQCHPFDCTVATSGIDNTIKIWTPSAPIPSIVAGGAAGPETADVLEAMENNQRKLCRNRDAILPFELLERFRMHDFGEGTLHPFECSQS* 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5378722 5441999 - Vvi18g482 Vvi18g482 780185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g482 762 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Vvi18g482 762 MobiDBLite consensus disorder prediction 524 546 - -
Vvi18g482 762 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 23 762 IPR045151 -
Vvi18g482 762 Gene3D - 573 700 IPR015943 GO:0005515
Vvi18g482 762 SUPERFAMILY TPR-like 383 478 IPR011990 GO:0005515
Vvi18g482 762 Gene3D - 32 325 IPR015943 GO:0005515
Vvi18g482 762 MobiDBLite consensus disorder prediction 584 605 - -
Vvi18g482 762 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 23 762 - -
Vvi18g482 762 Coils Coil 481 501 - -
Vvi18g482 762 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Vvi18g482 762 SUPERFAMILY WD40 repeat-like 40 695 IPR036322 GO:0005515
Vvi18g482 762 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 695 IPR001680 GO:0005515
Vvi18g482 762 SMART WD40_4 265 307 IPR001680 GO:0005515
Vvi18g482 762 SMART WD40_4 611 654 IPR001680 GO:0005515
Vvi18g482 762 SMART WD40_4 657 696 IPR001680 GO:0005515
Vvi18g482 762 SMART WD40_4 211 244 IPR001680 GO:0005515
Vvi18g482 762 SMART WD40_4 39 78 IPR001680 GO:0005515
Vvi18g482 762 SMART WD40_4 81 123 IPR001680 GO:0005515
Vvi18g482 762 SMART WD40_4 136 176 IPR001680 GO:0005515
Vvi18g482 762 Pfam WD domain, G-beta repeat 669 695 IPR001680 GO:0005515
Vvi18g482 762 Pfam WD domain, G-beta repeat 44 78 IPR001680 GO:0005515
Vvi18g482 762 Gene3D Tetratricopeptide repeat domain 354 508 IPR011990 GO:0005515
Vvi18g482 762 MobiDBLite consensus disorder prediction 585 605 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g482 K11807 WDTC1, DCAF9; WD and tetratricopeptide repeats protein 1 - vvi:100255806 1553.11
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g482 . . . . Bpe02g00134 . . Bma01g02591 . . . Cma09g00587 . . . Cpe06g00448 . . . . . . . . . . . . . . . Cone4ag1309 . . . . Csa03g04480 Chy04g00221 . . . Bda11g00790 . . . . . . Cmo01g01684 Cmo09g00572 . . . Car09g00516 . . Bhi09g02483 . . . Hepe01g2160 Mch11g0699 . . . . . . . . . . . Cme04g00248
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005324 1 4 1 1 1 0 3 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 4 2 1 39