Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g483 ATGGCACCCAGTTTCGACTGTGCAGCCTCAAGCCTTCTGTGTGGAGAGGACAACAGCAGCATCTTTGATGATGCTGATTATGGCGCTGCGGCGGAGGAGTTTGAGACTGCATGGCATCATCAGAATCATCGAAGTCGTAATCAAGAGAAGAGCTTTAATGGCGGAGAGTTTTTGATTGGGTTGCCAGTGCAGAGCGATGAGTGTTTGGCTTTGATGATTGAGAAGGAGTCCCAGCATTTGCCTGCTGCTGATTACTTGATGAGGCTCAGGAGTGGGGATTTGGACATTGGGTCTAGACAGGACGTTGTTGGTTGGATTGCAAAGGCTCACGCCCATTTCGGTTTTGGACCCCTGTGTGCATACTTGGCTATAAACTACCTGGATCGGTTCCTTTCCACCTATGAATTGCCTAAAGGTAAAGCTTGGATGGCACAGTTGTTGGCTGTGGCTTGCTTGTCCCTTGCAGCCAAAATGGAGGAGAATGAAGTTCCTTTGTGTCTTGATTTGCAGGTGGCCGAATCGAGATTTGTGTTTGAAGCCAGAACCATACAGAGAATGGAGCTTCTGGTGCTGAGGACATTGAAGTGGAGAATGCAAGCCGTGACCCCTTTCTCCTTCGTAGACTATTTTCTCCGCAGGATCAATGATGATGAATTCCCGGCCAGAACTTCAATCTTGCTGTCAATTCAACTCATATTAAGCACAGTAAAAGGGATTGACTTCTTGGAATTCAGGCCTTCTGAGATTGCAGCAGCAGTGGCAATATCTATTGCAGGAGAAACCCAAACAGTGGACATTGAGAAGGCCATTTCTGTTGTCATTGAACCTATAGAAAAGGAGAGAGTGCTCAAGTGTATTGAGCTGATGCATGATTTATCATTGATTAGTGGGTCTGTGAAGCGTTCTAGTACTGCTGCTTCAGTCCCTTCTGTGCCCCACACCCCAATTGGTGTGCTGGATGCTGCATGCTTGAGCTATAAAAGTGATGATACAACAGTTGGATCATGTGCAAATTCTTCACATAACAAAAAGAGGAAGCTAAACGCACCCCCTGAAGTGGAGCTATAA 1068 46.54 MAPSFDCAASSLLCGEDNSSIFDDADYGAAAEEFETAWHHQNHRSRNQEKSFNGGEFLIGLPVQSDECLALMIEKESQHLPAADYLMRLRSGDLDIGSRQDVVGWIAKAHAHFGFGPLCAYLAINYLDRFLSTYELPKGKAWMAQLLAVACLSLAAKMEENEVPLCLDLQVAESRFVFEARTIQRMELLVLRTLKWRMQAVTPFSFVDYFLRRINDDEFPARTSILLSIQLILSTVKGIDFLEFRPSEIAAAVAISIAGETQTVDIEKAISVVIEPIEKERVLKCIELMHDLSLISGSVKRSSTAASVPSVPHTPIGVLDAACLSYKSDDTTVGSCANSSHNKKRKLNAPPEVEL* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5462822 5465587 - Vvi18g483 Vvi18g483 780186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g483 355 Pfam Cyclin, C-terminal domain 201 297 IPR004367 -
Vvi18g483 355 Pfam Cyclin, N-terminal domain 69 198 IPR006671 -
Vvi18g483 355 MobiDBLite consensus disorder prediction 332 355 - -
Vvi18g483 355 CDD CYCLIN 98 191 IPR013763 -
Vvi18g483 355 SUPERFAMILY Cyclin-like 183 295 IPR036915 -
Vvi18g483 355 SUPERFAMILY Cyclin-like 64 198 IPR036915 -
Vvi18g483 355 ProSitePatterns Cyclins signature. 99 130 IPR006671 -
Vvi18g483 355 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 344 - -
Vvi18g483 355 Gene3D - 71 287 - -
Vvi18g483 355 Gene3D - 82 199 - -
Vvi18g483 355 SMART Cyclin_C_2 201 327 IPR004367 -
Vvi18g483 355 SMART cyclin_7 104 192 IPR013763 -
Vvi18g483 355 PANTHER CYCLINS 1 344 IPR039361 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g483 K18810 - vvi:100247298 684.871