Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g488 ATGGCTGCCAGATTCTTGCTTCTTCTTGTTCTTCCATCTTTTGTATTTTTTTATTTTAATATTGCATTAATCCACCATTTTCTATTCTACAGATTGGCTTCTGCAGAGCTCATCAACTTCATCCGGGCACAAAAGCTCAGCCATGAACTCCTCACCAACTTTAAGAGGAAATTGCTGGTTGTCCACAAAGCGCTCAATGATGCGGAGATGAAGCAATTTTCAGACCCACTAGTTAAAGACTGGCTGGTCCAAGTTAAGGATGTTGTGTATCACGCGGAGGACCTGTTAGACGAGATCGCTACCGACGCTTTGCGGTCCCAGATCGAAGCTGCTGACTCCCAAGATAGCGGAACTCATCAGGTGTGGAACTGGAAAAAGGTCTCTGCTTGGGTTAAGGCTCCATTTGCTAGTCAAAGTATGGAGTCCAGGGTCAAGGGCTTGATTTCTCTACTTGAAAACATTGCACAAGAAAAAGTTGAGCTAGGGCTGAAAGAAGGTGAGGGCGAGAAACTGTCACCAAGATCACCATCCACTTCTCTGGTGGATGAGTCCTTTGTGTACGGCAGGAATGAAATTAAAGAGGAGATGGTGAAGTGGTTGCTTTCTGATAAGGAAAATGCAACAGGCAACAACATAGATGTGATATCCATAATGGGCATGGGCGGCAGCGGCAAGACGACACTCGCTCAGCTTCTCTATAACCATGATAGAGTGAAGCAACACTTCCACTTGAAAGCATGGGTCTGTGTTTCCACCGAGTTTTTTCTAATCGAGGAGGTAACAAAATCATTTCTTAAGGAAATCGGTTCTGAAACTAAATCAGACGACACCCTAAATTTGCTTCAGCTTAAACTCAAAGAGAGCGTAGGTAACAAGAAATTTCTGCTCGTTCTCGACGACGTCTGGGATATGAAGTCTCTTGATTGGGATGGCCTACGAATTCCACTCCTCGCTGCAGCAGAGGGAAGCAAGATTGTTGTGACCAGTCGTAGTGAAACTGCTGCAAAAATCATGCGTGCAATCCGTAGTCATCATCTGGGGACATTAAGCCCTGAAGATAGTTGGTCCCTATTTACAAAACTCGCATTTCCAAATGGAGATTCCAGCGCTTATCCTCAGCTTGAAACTATTGGCAGAGAGATTGTGGACAAGTGCCAAGGATTGCCTTTGGCTGTAAAAGCACTCGGGAGCCTCTTGGACTCTAAGGCCGATAAAAGAGAATGGGAAGATATTTTGAACAGCAAAACATGGCATTCCCAGACTGATCATGAAATTCTTCCATCTTTTAGATTGAGTTATCAGCATCTTTCTCCCCCTGTGAAGCGTTGTTTTGCTTACTGTTCAATTTTTGCTAAGGACCATGAATTTGACAAAAAGAAGCTGATTCTATTATGGATGGCAGAAGGGCTTTTACACGCGGGACAAAGGGACGAAAGAATGGAAGAGGTAGGTGAGTCATGTTTTAATGAGCTTGTAGCAAAGTCATTTTTCCAAAAATCTATTACAAAAGAATCATGTTTTGTAATACATGATTTAATACATGACTTGGCTCAACATATCTCAGGAGAATTTTGTGTTCAATTGGAACAGTATAAGGTGCAAAAAATAACTGAGATGACTCGCCATTTTCGCTACTCTAATAGTGATGATGACAGGATGGTTGTATTTCAAAAGTTTGAGGCTGTTGGTGAAGCTAAACATCTTAGAACCTTTCTGGACGAGAAGAAATATCCATACTTCGGGTTTTATACATTGAGTAAAAGAGTTTTACAAAATATATTACCAAAATTTAAATCCTTGCGTGTGTTGTCATTGTGTGCATACAAGATAACTGAAGTGCCTGATTCAATACACAATTTAACACAATTGTGTTACTTGGATAGTTGGATCTCTCCTCAACACAGATTCAAAGATTACCTGAATCAGTATGTTGTTTATGCAATTTGCAAACAATGA 1956 41.41 MAARFLLLLVLPSFVFFYFNIALIHHFLFYRLASAELINFIRAQKLSHELLTNFKRKLLVVHKALNDAEMKQFSDPLVKDWLVQVKDVVYHAEDLLDEIATDALRSQIEAADSQDSGTHQVWNWKKVSAWVKAPFASQSMESRVKGLISLLENIAQEKVELGLKEGEGEKLSPRSPSTSLVDESFVYGRNEIKEEMVKWLLSDKENATGNNIDVISIMGMGGSGKTTLAQLLYNHDRVKQHFHLKAWVCVSTEFFLIEEVTKSFLKEIGSETKSDDTLNLLQLKLKESVGNKKFLLVLDDVWDMKSLDWDGLRIPLLAAAEGSKIVVTSRSETAAKIMRAIRSHHLGTLSPEDSWSLFTKLAFPNGDSSAYPQLETIGREIVDKCQGLPLAVKALGSLLDSKADKREWEDILNSKTWHSQTDHEILPSFRLSYQHLSPPVKRCFAYCSIFAKDHEFDKKKLILLWMAEGLLHAGQRDERMEEVGESCFNELVAKSFFQKSITKESCFVIHDLIHDLAQHISGEFCVQLEQYKVQKITEMTRHFRYSNSDDDRMVVFQKFEAVGEAKHLRTFLDEKKYPYFGFYTLSKRVLQNILPKFKSLRVLSLCAYKITEVPDSIHNLTQLCYLDSWISPQHRFKDYLNQYVVYAICKQ* 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5498179 5501829 - Vvi18g488 Vvi18g488 780191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g488 651 Gene3D - 433 520 IPR036388 -
Vvi18g488 651 PRINTS Disease resistance protein signature 214 229 - -
Vvi18g488 651 PRINTS Disease resistance protein signature 288 302 - -
Vvi18g488 651 PRINTS Disease resistance protein signature 385 399 - -
Vvi18g488 651 PANTHER DISEASE RESISTANCE RPP13-LIKE PROTEIN 1-RELATED 50 627 - -
Vvi18g488 651 Gene3D - 348 432 IPR042197 -
Vvi18g488 651 PANTHER DISEASE RESISTANCE PROTEIN RP 50 627 IPR044974 GO:0006952
Vvi18g488 651 Pfam Rx N-terminal domain 44 112 IPR041118 -
Vvi18g488 651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 447 IPR027417 -
Vvi18g488 651 Gene3D - 174 342 IPR027417 -
Vvi18g488 651 SUPERFAMILY L domain-like 509 627 - -
Vvi18g488 651 Gene3D - 28 135 - -
Vvi18g488 651 Pfam NB-ARC domain 209 414 IPR002182 GO:0043531
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g488 - - - vvi:100854887 1243.41
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g488 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000391 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83 83