Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g489 ATGGTTGGTCATTACTGGCTGAGGAGCTCTAAGCTCGCACCCAACCCGTTTCTGAAGTTGCAGATTGAGAATACTCTTGAGGCTGTTTGCAAGTTCGCCGAGGACGTCGTCAGCGGTAAGATTAAACCTCCATCTTCTCCAGAGGGTCGCTTTACACATGTCCTTTCTGTTGGAATTGGAGGTTCGGCTCTTGGACCTCAGTTTGTTGCAGAGGCATTGGCTCCTGATAATCCTCCTCTCAAGATAAGATTCATTGATAATACAGATCCAGCTGGAATTGATCACCAGATTGCCCAGCTTGGCCCCGAGCTGGCCTCTACAATAGTAATTGTCATTTCAAAGAGTGGAGGCACTCCTGAAACTAGGAATGGTTTGTTGGAAGTACAGAAGGCCTTTCGTGAAGCTGGTCTGGATTTTGCAAAACAGGGTGTTGCCATTACACAAGAAAATTCATTATTAGACAACACTGCTAGAATTGAGGGTTGGTTAGCTAGATTTCCTATGTTTGACTGGGTGGGTGGAAGGACATCTGAAATGTCTGCAGTTGGCCTACTTCCTGCTGCACTTCAGGGGATTGATATCAGAGAAATGCTTGCTGGTGCTTCATTGATGGATGAGGCTAATAGAACCACTGTGGTTAGGAATAACCCTGCAGCATTGCTAGCTTTATGTTGGTATTGGGCTTCTGAGGGAGTAGGATCCAAGGATATGGTTATTCTTCCTTACAAGGACAGCTTATTATTATTCAGTAGGTATTTGCAGCAACTGGTCATGGAATCAATTGGAAAGGAGTTTGACCTGGATGGAAATCGGGTGAATCAAGGACTTACGGTCTACGGGAATAAAGGCAGCACAGATCAACATGCATACATTCAACAATTGAGAGAGGGTGTGCACAACTTCTTTGTGACATTCATTGAAGTTCTGCGTGATAGACCCCCTGGTCATGATTGGGAGCTTGAACCAGGTGTCACATGTGGTGACTACCTCTTCGGAATGCTTCAGGGAACAAGGTCAGCTCTATATGCCAAGGACCGGGAATCAGTTACAGTCACTGTGCAGGAAGTGACGGCTAGATCTGTGGGGGCTATGATAGCATTGTATGAGCGAGCAGTTGGAATATATGCCTCACTAGTCAACATCAATGCTTACCATCAACCCGGTGTGGAAGCTGGGAAAAAGGCAGCAGGAGAAGTATTAGCTCTTCAGAAGCGGGTTCTGGCAGTTCTGAATGAGGCCAGCTGTAAGGAGCCCGTTGAACCATTGACACTTGATGAAGTAGCTGAACGCTGCCATGCGCCTGAAGATATCGAAATGATTTACAAGATTATTGCTCATATGGCCGCCAATGATAGAGCTCTTATTGCTGAAGGCAGTTGCGGTTCACCCCGGAGCATCAAAGTTTTCCTTGGGGAGTGTTATGTCGATGACCTGTATGCTTAA 1443 46.22 MVGHYWLRSSKLAPNPFLKLQIENTLEAVCKFAEDVVSGKIKPPSSPEGRFTHVLSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTIVIVISKSGGTPETRNGLLEVQKAFREAGLDFAKQGVAITQENSLLDNTARIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGIDIREMLAGASLMDEANRTTVVRNNPAALLALCWYWASEGVGSKDMVILPYKDSLLLFSRYLQQLVMESIGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFVTFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYAKDRESVTVTVQEVTARSVGAMIALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLALQKRVLAVLNEASCKEPVEPLTLDEVAERCHAPEDIEMIYKIIAHMAANDRALIAEGSCGSPRSIKVFLGECYVDDLYA* 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5505642 5516683 + Vvi18g489 Vvi18g489 780192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g489 480 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 1 480 - -
Vvi18g489 480 SUPERFAMILY SIS domain 1 403 IPR046348 GO:0097367|GO:1901135
Vvi18g489 480 CDD SIS_PGI_2 235 399 IPR035482 -
Vvi18g489 480 Hamap Glucose-6-phosphate isomerase [pgi]. 1 403 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g489 480 Pfam Phosphoglucose isomerase 342 401 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g489 480 Pfam Phosphoglucose isomerase 22 310 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g489 480 ProSitePatterns Phosphoglucose isomerase signature 2. 376 393 IPR018189 GO:0004347|GO:0006094|GO:0006096
Vvi18g489 480 Gene3D - 9 189 - -
Vvi18g489 480 PRINTS Glucose-6-phosphate isomerase signature 54 73 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g489 480 PRINTS Glucose-6-phosphate isomerase signature 166 184 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g489 480 PRINTS Glucose-6-phosphate isomerase signature 242 263 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g489 480 PRINTS Glucose-6-phosphate isomerase signature 344 362 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g489 480 PRINTS Glucose-6-phosphate isomerase signature 362 376 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g489 480 PRINTS Glucose-6-phosphate isomerase signature 376 389 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g489 480 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 1 409 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g489 480 CDD SIS_PGI_1 23 189 IPR035476 -
Vvi18g489 480 Gene3D - 190 385 - -
Vvi18g489 480 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 1 480 IPR001672 GO:0004347|GO:0006094|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g489 K01810 GPI, pgi; glucose-6-phosphate isomerase [EC:5.3.1.9] - vvi:100262681 957.207
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g489 . . Bda01g00916 Bda03g00461 . Bpe04g00422 Bma04g00436 . . Cmo12g00145 . . . Car12g00170 . . Cpe07g00158 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01160 . . . . . . Cma12g00187 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009057 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 2 1 1 32