Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g493 ATGGTATATAAAGTAATACTTGAACAAGTATACCCCAACGATTGTGGTTTATATCAATTTTTGTTTTGGACGTCAAGTGCTATTCCTCAAAAGGGTAGTGAGGTGAATTTGACCCTTGGTGGTATTGACCTCAACAATTCAGGCAGTGTGGATGTCAAAGCAGATAAAAAACTCTTGACTGTGCTCTTTCCTGATGGTCGTGATGGGCGAGCTTTCACACTCAAGGCTGAAACTTTAGAGGATCTATATGAGTGGAAGGCTGCACTTGAAAATGCTTTATCACAGGCACCAAGTGCTGCCTTGGTGATGGGGCAAAATGGAGTCCTCAAGAATGATCAGGCTGAGGCAGTTGATGTGAAGGATAAGTTGCCTGCGAAGTCCTCGGTCCTTGGTAGGCCAATTTTACTTGCTTTGGAAGATGCTGATGGTACTCCTTCTTTCTTGGAAAAGGCCCTTAGATTTATAGAAGAACATGGAGTCAAAATAGAAGGGATCTTGCGACAAGCTGCAGATGTCGATGATGTTGAATGTCGAATTCGGGAATATGAAAAAGGAAAAAATGAATTTTCTCCAGATGAGGATCCGCATATCATCGCTGATTGCGTCAAGTATGTCCTCCGGGAGTTACCATCATCTCCAGTTCCTGCATCTTGCTGCAACGCATTATTAGAAGCATGTCGAACTGATCGTAACAATAGAGTCAATGCTATGCGTGGTGCAATATGTGAAACATTCCCAGAGCCTAATCGCCGCCTATTGCAAAGAATTCTAATGATGATGCAAACTGTGGCTTCTCACAAAGCTGAGAATCGAATGAGCTCTTCAGCTGTGTCTGCTTGCATGGCACCTTTACTTCTTCGTCCCCTTTTGGCTGGTGATTGCGAGCTTGAAAATGATTTTGATGTGGGTGGGGATGGTTCTGCTCAGCTTCTGCAAGCAGCTGCTGCTGCTAACCATGCTCAAGCTATTGTCATAACTCTCCTAGAGGAGTATAATAATATGTTTGGGGGTTTCATTTCTTTTTATGTGAATAAAGGGCATATGACTAGGTTTTTGCTTGATATGTGGTTGTGGAGTGTTCTCAATAATAGCAAGAGTTTCTTTGAAAGTAAAAAAAAGAAGTCCTTTGGTGGTTTGGCTTCTGTGGTTAACAAAGAGGAGCAGACCCCGTTGAGTATCATTCTGGCTAATGGTAGCAATGGGATCCTGGAAGATGATGGATATGATGATGTAACAGAAGACCCTGATGCAGATACAGATGATGATCTGGAACATTCATCAAATGGAACCTGCAGTGAAAGTGGTAACAATGGAGATGATGATCTTTGTGATGGTTTTGAAGCCAATCAGAAGTTGTCATCAAGTCCACCCCAAATTTCATTGCTTCATCAGGAGAATGTAGAAAATAGTGGCAAATTTCAGACTCAAAGTAATAGTTGTTCAGCAATGCAGGGTAGTTATTCTGGCGAACAATTAGAAGAAGTTCCTGTAGAAGCTAGCTCCATACATAAGCTAGCTGGCCAGCGTTCATCCCCTCATATTAAAAAATCTACGACTATAGCAAGTGGACCAATGAATAAGCGCCCTACTGTTTGGGGCCGTACCCCTGGAAGAAAAAACCTTTCCATGGAATCCATTGATTATGTCGTTGAAGATGAGGTTGAAATCCAGAGGCTTGAGGCCTGGAAAGCTGACCTACAGAATAGAATTGCTGAAGAGTCTAAAGAGAATGCAGTACTGCAAGCAAGTTTGGAAAGAAGAAAAAGGGACTTGCATGAGCATCGCCAAGCACTTGAGCAAGATGTGGCAAGGCTACAGGAACAATTGCAAAAGGAGAGAGATTTGAGGACAGCTCTGGAAGCTGGACTTAATATGTCTCAGGGTCCATTACCTATCTCAGCCACTATTGATGGAAAGGTGAAGGCAGAGCTTGAGGAAGTTGCTCTTACAGAGGCAGATGTCATTAATTTAAAGCAGAGGGTTGATGATCTTAGTGCTCAGCTTAATCAACAATGTGAGGTAAACTGTGGTCCTATGCATGATTCATGCAGTGAGCCCCAAAGAACACAGAACCATCAAGCAAAACTGAAGGATAAACAGAAGGATGTGGAAACTACATCTACTTCACATCTTCATGAAAAGTCAACAAGAAATAAGGTGCAACAGGATGCTTGTATGGATGGAGCAGACCGTGAGAACAAGAAACATGAAAGCAAAAATCCTCTTCAGAACCAGCAGCTGGACCCAGTACGTAGCAGCTGCAGCTCCAAGTTTGTTGGTGCTCAGGCCACTTCATCTGCTGCAGACCCTGCAGTAGGCAGGTCCAATAGTCATTCCAATTCGAAGAAGTCGGGTACAAGGAATGAGGGATCCAATTCTACAACTTCTGCACTGTCCAAGCTGACAACCCGACTCAACTTCTTAAAGGAGAGGCGTACTCAGATAGCAAATGAGATCCAAAATATGGACAAAGGCAGAAGTTCAAGTTCATGTTCAAGTTCAAATCAAGCTGCTCAAAACCCGGAAAGGGGCAGAGGATCTGAAGGTCGCCAACCAGTCCAAAATATGGACAAGTCTCAAGCCTCTGAAGTTCAATCCCTCCAAAATACGGAGAAAGGTAAGGGACCGGACTGCAGCCAATCTCTCCAAAATCAGGACAAGCCTAGGAAATCAGATGCTCAACCACAGCAAAAACCAGGATAG 2703 43.43 MVYKVILEQVYPNDCGLYQFLFWTSSAIPQKGSEVNLTLGGIDLNNSGSVDVKADKKLLTVLFPDGRDGRAFTLKAETLEDLYEWKAALENALSQAPSAALVMGQNGVLKNDQAEAVDVKDKLPAKSSVLGRPILLALEDADGTPSFLEKALRFIEEHGVKIEGILRQAADVDDVECRIREYEKGKNEFSPDEDPHIIADCVKYVLRELPSSPVPASCCNALLEACRTDRNNRVNAMRGAICETFPEPNRRLLQRILMMMQTVASHKAENRMSSSAVSACMAPLLLRPLLAGDCELENDFDVGGDGSAQLLQAAAAANHAQAIVITLLEEYNNMFGGFISFYVNKGHMTRFLLDMWLWSVLNNSKSFFESKKKKSFGGLASVVNKEEQTPLSIILANGSNGILEDDGYDDVTEDPDADTDDDLEHSSNGTCSESGNNGDDDLCDGFEANQKLSSSPPQISLLHQENVENSGKFQTQSNSCSAMQGSYSGEQLEEVPVEASSIHKLAGQRSSPHIKKSTTIASGPMNKRPTVWGRTPGRKNLSMESIDYVVEDEVEIQRLEAWKADLQNRIAEESKENAVLQASLERRKRDLHEHRQALEQDVARLQEQLQKERDLRTALEAGLNMSQGPLPISATIDGKVKAELEEVALTEADVINLKQRVDDLSAQLNQQCEVNCGPMHDSCSEPQRTQNHQAKLKDKQKDVETTSTSHLHEKSTRNKVQQDACMDGADRENKKHESKNPLQNQQLDPVRSSCSSKFVGAQATSSAADPAVGRSNSHSNSKKSGTRNEGSNSTTSALSKLTTRLNFLKERRTQIANEIQNMDKGRSSSSCSSSNQAAQNPERGRGSEGRQPVQNMDKSQASEVQSLQNTEKGKGPDCSQSLQNQDKPRKSDAQPQQKPG* 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5565991 5604360 + Vvi18g493 Vvi18g493 780196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g493 900 MobiDBLite consensus disorder prediction 820 900 - -
Vvi18g493 900 MobiDBLite consensus disorder prediction 504 536 - -
Vvi18g493 900 MobiDBLite consensus disorder prediction 852 900 - -
Vvi18g493 900 Gene3D Rho GTPase activation protein 113 336 IPR008936 GO:0007165
Vvi18g493 900 SUPERFAMILY GTPase activation domain, GAP 143 337 IPR008936 GO:0007165
Vvi18g493 900 SUPERFAMILY PH domain-like 35 98 - -
Vvi18g493 900 SMART RhoGAP_3 142 332 IPR000198 GO:0007165
Vvi18g493 900 ProSiteProfiles Rho GTPase-activating proteins domain profile. 136 335 IPR000198 GO:0007165
Vvi18g493 900 ProSiteProfiles PH domain profile. 1 94 IPR001849 -
Vvi18g493 900 MobiDBLite consensus disorder prediction 404 456 - -
Vvi18g493 900 MobiDBLite consensus disorder prediction 691 741 - -
Vvi18g493 900 MobiDBLite consensus disorder prediction 406 421 - -
Vvi18g493 900 Coils Coil 556 622 - -
Vvi18g493 900 MobiDBLite consensus disorder prediction 504 525 - -
Vvi18g493 900 MobiDBLite consensus disorder prediction 820 842 - -
Vvi18g493 900 PANTHER RHO GTPASE-ACTIVATING PROTEIN 7 23 836 - -
Vvi18g493 900 Coils Coil 798 818 - -
Vvi18g493 900 MobiDBLite consensus disorder prediction 680 798 - -
Vvi18g493 900 Pfam Leucine-zipper of ternary complex factor MIP1 592 671 IPR025757 -
Vvi18g493 900 Coils Coil 647 667 - -
Vvi18g493 900 Pfam RhoGAP domain 145 288 IPR000198 GO:0007165
Vvi18g493 900 MobiDBLite consensus disorder prediction 742 798 - -
Vvi18g493 900 CDD RhoGAP 145 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g493 - - - vvi:100259137 1526.15
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g493 . . . . . . . . . Cmo12g00147 . . . Car12g00172 . . Cpe07g00160 . . . . . . . . . . . . . . Cone4ag1303 . . . . . . . . . . . Bpe02g01158 . . . . . . Cma12g00190 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003403 0 1 1 0 1 1 2 1 2 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 12 4 1 47