Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g50 ATGGACTTGCAAGGGGTTGATTTCTCTCCTAGGCCACTGTCCAGAGCATCATTAAGTGACTTGCATTTCTTGGCCAACTTTATCATGAGCACTTACCTGGGTCCTGATGTCAAGTCTGACAACCCACGACGCTCAGCATCGCAAAGAGTTGCTGAAGGTTTGCCTCCGTACTCTTTAAATGATCTGGGTCTTTCATTTCTCAGTGTTTCTCAACTGGAGAGCTTATATTACTTTATCCTGAGGCATGCACTTCCTAACCTGGCATTGAGCCCATACTTGTTCCATATGTATCTGAAGGGAGACCTGCCTCTGCTGAACTCAGGTCTTCCCGAGGACAGACTGCAGTTTACAAGTTTTTTTCCTTTACATCTTCATGAACAGACAAGCTTCCTGAGAGGCCTTGACATTGTAAAGGGTATTATTCTTATAAGTGAACCTGATACATCATATATGAAACAAGATGTACTGGAAAGGTTTAGATACTTATCAGGTATGGATAGTTTGAAGATTGATATAAATGAAAGCCAAAGGTATCAACATAGGCACTGGACTGGCAGAGAAGAGATTGAACGGAATTTCTTGACAATTAGTGGAGGACCATATGCAGGAAATGCTTCCAATATAAATAGTATTTCACCATCCAAGGCATCTATTGTTTTGACTGGGGTAGCTGGAGAAGTGAGTGCTGGACCACCTATTGGTCGTGTGGACATTGGTGTTAGCAAAACTGCATATTTCTTTCGTGTTGCTCTACCTGGGGTCAGGAAAGATAACCGCCATTTTGGATGTGAGGTTGAGAACGATGGGAAGGTTCAAATCCATGGGTCAACCAGCGCTGGTGGAAGAACAATTGTGAAACATCCCCGGGTGTTCCAGATGAAGCTGCAGCAGCTATGCCCACCTGGGCCATTCACTGTATCTTTCAGGTTGCCAGGACCTGTTGATCCCAGGCTGTTCAAAGCTAACTTCAGATCAGATGGCATTTTTGAGGGCATCATAGTGAAATCTGAAGACATGGACTACTCACAAGTGGTATTTGCCATTATTCGATATTCTGCCTCAGTTGACGAGCGTGAAACTGTACTTTGTTTTTTAGACTTCCATAAAATAAATGATTCTCCAAGAAAAATGCAAAACCCATTGATGGATCTTCTTGTATCTTTACAAGCAACCCAATCTGAATCAGTAAAGGCTTTAAGTAAGGCTAGAACCATAACACAAGCAACCAAAAGCTCCAAGGTGAGTATAAGAGGGAAGTTTATTGTACAAAACTTCAAATGGAGTTTTGTTAGATAA 1296 42.21 MDLQGVDFSPRPLSRASLSDLHFLANFIMSTYLGPDVKSDNPRRSASQRVAEGLPPYSLNDLGLSFLSVSQLESLYYFILRHALPNLALSPYLFHMYLKGDLPLLNSGLPEDRLQFTSFFPLHLHEQTSFLRGLDIVKGIILISEPDTSYMKQDVLERFRYLSGMDSLKIDINESQRYQHRHWTGREEIERNFLTISGGPYAGNASNINSISPSKASIVLTGVAGEVSAGPPIGRVDIGVSKTAYFFRVALPGVRKDNRHFGCEVENDGKVQIHGSTSAGGRTIVKHPRVFQMKLQQLCPPGPFTVSFRLPGPVDPRLFKANFRSDGIFEGIIVKSEDMDYSQVVFAIIRYSASVDERETVLCFLDFHKINDSPRKMQNPLMDLLVSLQATQSESVKALSKARTITQATKSSKVSIRGKFIVQNFKWSFVR* 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 565467 568841 + Vvi18g50 Vvi18g50 779753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g50 431 CDD ACD_sHsps-like 237 328 - -
Vvi18g50 431 PANTHER INCREASED DNA METHYLATION 3 17 337 IPR039321 -
Vvi18g50 431 Gene3D - 233 347 IPR008978 -
Vvi18g50 431 PANTHER INCREASED DNA METHYLATION 3 17 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g50 - - - vvi:100246169 432.95
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g50 . . . . . . . . Cmo05g00983 Cmo12g00628 . . . . . . . Bhi04g01208 . . . . . . Cla08g00928 Cam08g1373 Cec08g0956 Cco08g1075 Clacu08g1081 . Cre08g0865 . . . . . . . Cme03g01328 . Blo18g00734 . Bda01g01572 Bpe02g01766 . Bma01g00693 . . . . Cma12g00693 Cma05g00964 Car05g00846 . Cpe11g00775 . . . . . . . . . . . . . . . . . Chy03g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006600 1 5 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 3 1 1 38