Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g504 ATGAAGTTGAAGTTGGAGGATGGGGATTCAGGAACAAGGGTGGAGGGAAAATCGACGGCTGCATGCAACAGCCACAGCGAGGCTGAGAGGAGGCGCAGACAGCGAATTAACGCTCACCTCTCCACTCTCCGCACTCTCCTCCCTAACACCACCAAAACAGACAAGGCGTCATTGCTGGCGGAGGTGGTTCGGCACGTGACGGAGCTCAGGAAGCGCGCTGCTGACGTGGCGGGGCAGAACGGAGACGGATGCTGCAGCGGCGGTGGATCGGAGTCGTGGACGTTTCCTGGAGAGACGGACGAGGTGACTTTGGGGTACTACGAGGGAGATGAGAGGCTGATAAAGGCGACGTTGTGCTGCGAGGATAGACCGAGTTTGAACCGGGATCTGACGCAGGCAATTGGCTCGGTGAGGGCACGGGTGGTGCGGGCCGAGATGGCGACGGTGGGAGGGCGGACGAAGAGCGTGGTGGTGATGCAGTGGGGTGGTGGTGGGGAGGCTGAACTTGGGAATTTGAGAAGGGCATTGAAAGCTGTGGTGGAAAATCGGGCTTCGGGTTTTGGGTCCACCGGGGTGTTCCCACTTCACAAGCGCCCTCGTTTCTCTACTTCAAACGCTTCTTCTTAA 627 58.85 MKLKLEDGDSGTRVEGKSTAACNSHSEAERRRRQRINAHLSTLRTLLPNTTKTDKASLLAEVVRHVTELRKRAADVAGQNGDGCCSGGGSESWTFPGETDEVTLGYYEGDERLIKATLCCEDRPSLNRDLTQAIGSVRARVVRAEMATVGGRTKSVVVMQWGGGGEAELGNLRRALKAVVENRASGFGSTGVFPLHKRPRFSTSNASS* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5668080 5668815 - Vvi18g504 Vvi18g504 780207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g504 208 PANTHER OS09G0463900 PROTEIN 10 205 - -
Vvi18g504 208 Pfam Helix-loop-helix DNA-binding domain 22 69 IPR011598 GO:0046983
Vvi18g504 208 MobiDBLite consensus disorder prediction 1 31 - -
Vvi18g504 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 24 77 IPR036638 GO:0046983
Vvi18g504 208 SMART finulus 26 75 IPR011598 GO:0046983
Vvi18g504 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 20 69 IPR011598 GO:0046983
Vvi18g504 208 PANTHER TRANSCRIPTION FACTOR BHLH30 10 205 IPR045847 GO:0003700|GO:0006355
Vvi18g504 208 SUPERFAMILY ACT-like 117 181 IPR045865 -
Vvi18g504 208 Gene3D - 15 76 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g504 - - - vvi:104882497 400.208
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g504 . . Bda01g00912 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag1448 . . . . . . . . . . Bpe02g01151 . Bma01g01373 Bma02g00111 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007814 1 1 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 2 2 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14333 PF00010 HLH 2.90E-12 No_clan Vvi TF