Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g508 ATGGAGGAAGGAAGCAACAACAGGGCTGAGGCCGAACGCCTACTGGGTGTCGCCGAGAAGCTTTTGCATACCCGTGATTTCAATGGCTCTAAAGACTTCGCAATTCTCGCCCAGGAGACCGAGCCCCTCCTCGACGGCACCGATCAGATCTTGGCCGTCGCTGACGTCCTCATCGCCTCTGAAAAGCGCATCAACAACCACCACGATTGGTACGCCATCTTGCAGACCGACCGCCGATCCGATGACCTTGATCTCATCAAGAAACAGTATAGGAGACTCGCTCTCCTTCTGCACCCGGACAAGAACAAGTTCGTCTTCGCCGATCACGCCTTCAAGCTTGTGGCGGACGCCTGGGCGGTCCTCTCCGACCCCGCTAAGAAGTCGCTTTACGACAACGAGCTCAGCCTCTTCTCCAAAGTCGATCTCGCGGCCTCCGGCTCGTCCGATGATCAACGGCCGTTGCGGCTAACGAGTTTTTGGACAGCCTGTCCATATTGTTATATATTGTATGAGTACCCTAGGGTTTACGAGGGTTGTTGTTTGAGGTGTCAGAATTGCCAGAGGGCGTTTCACGCGGCATTGGTACCGTCGTTGCCGCCGTTGGTGCCGGGCAAGGAGGCCTATTACTGCTGCTGGGGTTTCTTTCCGCTAGGGTTTGCAATTTCTGGGGCAGAGGGCGGAAAGGGTAAGGGTGCGGGAGGGTTTCCAAATTGGATGCCACCCATGTTTGGAGGTGGAGTTGCGGCGGAGGGCGGTGGCGGGAGTGCTGGTGGGGTTGGGGTCGTAGAGGTGTCGGACGGAAGTGCATCAGCTGGATTGGTGAAGCCGAAGAGGAGGGGAAGACCTCCAAAGAAGGCAGTCCACCCAATCTTGCTATTCAATGTTGTTTTGTTTTGTAGATTTTGGCTCTCAATCTTTTGTTCTTGGACTGCCTGTAAATTATATTTTGCAGTAATGTCATTCCCTCTAGTTTTCTGCAATACACTCCCCACCTTTTCCCCCCTCTTGATTGTATTTCTTGCTCGAGAGTCGAGAGTTATAAATACATACACCATAATTCTTTTCAAAATGTCTATCATCATTTAG 1086 52.49 MEEGSNNRAEAERLLGVAEKLLHTRDFNGSKDFAILAQETEPLLDGTDQILAVADVLIASEKRINNHHDWYAILQTDRRSDDLDLIKKQYRRLALLLHPDKNKFVFADHAFKLVADAWAVLSDPAKKSLYDNELSLFSKVDLAASGSSDDQRPLRLTSFWTACPYCYILYEYPRVYEGCCLRCQNCQRAFHAALVPSLPPLVPGKEAYYCCWGFFPLGFAISGAEGGKGKGAGGFPNWMPPMFGGGVAAEGGGGSAGGVGVVEVSDGSASAGLVKPKRRGRPPKKAVHPILLFNVVLFCRFWLSIFCSWTACKLYFAVMSFPLVFCNTLPTFSPLLIVFLARESRVINTYTIILFKMSIII* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5687067 5688394 - Vvi18g508 Vvi18g508 780211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g508 361 ProSiteProfiles dnaJ domain profile. 69 134 IPR001623 -
Vvi18g508 361 SUPERFAMILY Chaperone J-domain 63 134 IPR036869 -
Vvi18g508 361 Gene3D DnaJ domain 56 146 IPR036869 -
Vvi18g508 361 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 246 - -
Vvi18g508 361 ProSitePatterns Nt-dnaJ domain signature. 111 130 IPR018253 -
Vvi18g508 361 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 246 - -
Vvi18g508 361 CDD DnaJ 69 123 IPR001623 -
Vvi18g508 361 Pfam DnaJ domain 69 131 IPR001623 -
Vvi18g508 361 PRINTS DnaJ domain signature 71 89 IPR001623 -
Vvi18g508 361 PRINTS DnaJ domain signature 90 105 IPR001623 -
Vvi18g508 361 PRINTS DnaJ domain signature 106 126 IPR001623 -
Vvi18g508 361 SMART dnaj_3 68 126 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g508 - - - vvi:100260770 514.227
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g904 Vvi18g508 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g508 . Blo12g00731 . Bda03g00457 . Bpe04g00418 Bma04g00432 . . . Cma01g01645 Cma09g00593 . . . Cpe06g00454 . . . . . . . . . . . . . . . Cone6ag1532 . . . Lsi04g02278 Csa03g04491 Chy04g00209 . . . . . . . . . Sed14g1000 Cmo01g01695 Cmo09g00579 . . . Car09g00524 . . Bhi09g02496 Tan01g3850 Cmetu01g2584 . Hepe01g2168 Mch11g0707 . Cla11g01422 Cam11g1478 Cec11g1508 Cco11g1504 Clacu11g1639 Cmu11g1457 Cre11g1875 . . . Cme04g00239
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi18g508 ECH 1 287 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 57.3 4.1e-88 322.0
Vvi3g955 . 43 284 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 51.6 1.2e-63 240.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009723 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 32