Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g509 ATGGCGAGAGAGAAGATCAAGATCAGGAAGATCGATAACGTGTCGGCGAGGCAGGTGACCTTCTCCAAGAGGAGACGAGGGCTTTTCAAGAAAGCTGAAGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTTCCACTGGGAAGCTCTTTGACTATTCCAGCTCCAGTATGAAGGATATACTTGGAAGGTACACTATGCACTCAAATAATCTGGAAAAGTTGGAGGGACCATCACTTGAACTGCAGCTTGAGAATAGCAACCATGTCCGATTGAGCAAAGAAATTGCAGATAAGAGCCATCAACTGAGGCAGATGAGGGGAGAGGATATCCAAGGACTAAATATAGAGGAATTATTGAAATTAGAGAAAATGCTTGAAGCAGGACTTAGTCGTGTACTCAAATCAAAGAGTGATCGGATAATGACCGAGATCGCCACTCTCCAGACAAAGGGGGCTCAGCTGATGGAAGAGAACAACAAATTAAGACAGAAAATGGAAATAATCTGTAAAGGAAAACGGCTAATGACTATGGAATCGGATAACATGATCCTTGAGGAAGGCCAGTCATCGGAGTCTATCACCAATGTCTACAGTTGCAGTAGTGGTCCTCCTCAAGAGGATGACAGCTCTGACACATCTCTCAAGCTTGGGCTGCCCTTCTCTTAA 681 44.64 MAREKIKIRKIDNVSARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSSTGKLFDYSSSSMKDILGRYTMHSNNLEKLEGPSLELQLENSNHVRLSKEIADKSHQLRQMRGEDIQGLNIEELLKLEKMLEAGLSRVLKSKSDRIMTEIATLQTKGAQLMEENNKLRQKMEIICKGKRLMTMESDNMILEEGQSSESITNVYSCSSGPPQEDDSSDTSLKLGLPFS* 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5694492 5711399 + Vvi18g509 Vvi18g509 780212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g509 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Vvi18g509 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi18g509 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi18g509 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi18g509 226 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 221 - -
Vvi18g509 226 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Vvi18g509 226 MobiDBLite consensus disorder prediction 192 226 - -
Vvi18g509 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi18g509 226 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi18g509 226 Pfam K-box region 91 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi18g509 226 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Vvi18g509 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi18g509 226 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Vvi18g509 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi18g509 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi18g509 226 Coils Coil 149 169 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14334 PF01486 K-box 2.50E-14 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g509 - - vvi:100260900 429.869