Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g509 | ATGGCGAGAGAGAAGATCAAGATCAGGAAGATCGATAACGTGTCGGCGAGGCAGGTGACCTTCTCCAAGAGGAGACGAGGGCTTTTCAAGAAAGCTGAAGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTTCCACTGGGAAGCTCTTTGACTATTCCAGCTCCAGTATGAAGGATATACTTGGAAGGTACACTATGCACTCAAATAATCTGGAAAAGTTGGAGGGACCATCACTTGAACTGCAGCTTGAGAATAGCAACCATGTCCGATTGAGCAAAGAAATTGCAGATAAGAGCCATCAACTGAGGCAGATGAGGGGAGAGGATATCCAAGGACTAAATATAGAGGAATTATTGAAATTAGAGAAAATGCTTGAAGCAGGACTTAGTCGTGTACTCAAATCAAAGAGTGATCGGATAATGACCGAGATCGCCACTCTCCAGACAAAGGGGGCTCAGCTGATGGAAGAGAACAACAAATTAAGACAGAAAATGGAAATAATCTGTAAAGGAAAACGGCTAATGACTATGGAATCGGATAACATGATCCTTGAGGAAGGCCAGTCATCGGAGTCTATCACCAATGTCTACAGTTGCAGTAGTGGTCCTCCTCAAGAGGATGACAGCTCTGACACATCTCTCAAGCTTGGGCTGCCCTTCTCTTAA | 681 | 44.64 | MAREKIKIRKIDNVSARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSSTGKLFDYSSSSMKDILGRYTMHSNNLEKLEGPSLELQLENSNHVRLSKEIADKSHQLRQMRGEDIQGLNIEELLKLEKMLEAGLSRVLKSKSDRIMTEIATLQTKGAQLMEENNKLRQKMEIICKGKRLMTMESDNMILEEGQSSESITNVYSCSSGPPQEDDSSDTSLKLGLPFS* | 227 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 5694492 | 5711399 | + | Vvi18g509 | Vvi18g509 | 780212 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g509 | 226 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 221 | - | - | |
Vvi18g509 | 226 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi18g509 | 226 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi18g509 | 226 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi18g509 | 226 | PANTHER | MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 | 1 | 221 | - | - | |
Vvi18g509 | 226 | SUPERFAMILY | SRF-like | 3 | 75 | IPR036879 | GO:0003677|GO:0046983 | |
Vvi18g509 | 226 | MobiDBLite | consensus disorder prediction | 192 | 226 | - | - | |
Vvi18g509 | 226 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi18g509 | 226 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Vvi18g509 | 226 | Pfam | K-box region | 91 | 171 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Vvi18g509 | 226 | Gene3D | - | 14 | 93 | IPR036879 | GO:0003677|GO:0046983 | |
Vvi18g509 | 226 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi18g509 | 226 | CDD | MADS_MEF2_like | 2 | 77 | IPR033896 | GO:0000977|GO:0045944 | |
Vvi18g509 | 226 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi18g509 | 226 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi18g509 | 226 | Coils | Coil | 149 | 169 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14334 | PF01486 | K-box | 2.50E-14 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g509 | - | - | vvi:100260900 | 429.869 |