Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g513 ATGGCCCTTGCTGGTTCTATGCAATTATCCCGTGAATTGGGAATTCAGAATAGGCATGGGTACAGTAACCAACCTAAGATTATGATGGCAAAAGATCGATTACATCTTCTCAGCATCACTCTCTCATCTCATGCTTCGAGACAGGATGCTTTGAGTCTTCATCTTTTAAATAGCATGCGTGGGTCAATAACTCCTGTATCTTCTAGATGTGAATTTTTCCTGTGCCGATCTTTTCTAGCACCAGGTGGAGGAAATGAGATTTCAGTTTTAAAATCTGCTGCCTTGGTTTTGACAAGGTCATGTAATGCTTTACGAGGAAGGCCTCTTGTACTTCAATTGGTTCCAGCAGTTAGCATTGTTGCTTTTGCTGCATGGGGTCTAGGGCCGCTAATGCGTCTTAGCAGGAATCTTTTCCTCAATAAGACCGATAGTAGTTGGAAAAAGAGTAGTACATATTATGTTCTGACCTATTACCTTCAACCTTTGCTGCTTTGGATTGGAGCAATGCTTATTTGCAGAGCATTGGATCCAATCATTCTACCTTCAAAAGAGAGCCAAGCTGTTAAGCAACGACTTCTAATTTTTATACGATCGTTATCAACGGTGCTGGCCTCTGCCTATTGTTTATCAAGCTTGATTCAACAAGTACAAAATTTCTTCATGGAAAACAATGACTCCAGTGATGCTAGAACTATGGGCTTCCAGTTTGCTGGGAAAGCTGTTTATACTGCAATATGGGTGGCTGCTGTTTCATTGTTCATGGAGTTGCTGGGTTTTTCCACCCAGAAATGGCTAACTGCTGGGGGTCTTGGCACAGTATTGCTCACCCTTGCTGGTCGTGAGATATTCACAAATTTCCTTTCAAGCGTAATGATCCATGCAACACGACCATTTGTTGTGAACGAATGGATTCAAACAAAGATTGAAGGTTATGAAGTTTCTGGGACTGTTGAGCATGTGGGTTGGTGGTCACCGACAATCATAAGAGGTGATGATCGGGAAGCAGTTCACATTCCAAACCACAAATTCACAGTGAATGTTGTGAGGAATCTTAGCCAGAAGACCCATTGGCGCATCAAGACTCACCTTGCCATCAGCCACTTGGATGTCAATAAGATTAATAATATTGTAGCTGATATGCGTAAGGTTTTAGCCAAAAATCCTCAAGTAGAGCAGCAAAGGTTGCATAGAAGAGTGTTTCTGGACTATATTGATCCAGAGAACCAGGCTCTTTTGATTTTGGTTTCATGCTTTGTGAAAACCCCACGTTTTGAAGAGTACCTTTGTGTGAAGGAAGCAATACTCTTGGATCTTCTCAGAGTTATCAGCCATCATCAAGCTCGCCTTGCAACACCCATTCGTACGGTTCAGAAAGAATACAGCATGGCTGACATGGAAATGGAAAATATTCCATTTGCTGACCCGATATTCACCCGCTCCAGTGCAGCTGCTAACCGTCCACTCCTGCTGATTGAGCCCTCTTATAAAATGAATGGTGATGATAAAACCAAGGCTTCCACAGGCTGGAGCATCGTCAATTCTTGA 1545 42.59 MALAGSMQLSRELGIQNRHGYSNQPKIMMAKDRLHLLSITLSSHASRQDALSLHLLNSMRGSITPVSSRCEFFLCRSFLAPGGGNEISVLKSAALVLTRSCNALRGRPLVLQLVPAVSIVAFAAWGLGPLMRLSRNLFLNKTDSSWKKSSTYYVLTYYLQPLLLWIGAMLICRALDPIILPSKESQAVKQRLLIFIRSLSTVLASAYCLSSLIQQVQNFFMENNDSSDARTMGFQFAGKAVYTAIWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDYIDPENQALLILVSCFVKTPRFEEYLCVKEAILLDLLRVISHHQARLATPIRTVQKEYSMADMEMENIPFADPIFTRSSAAANRPLLLIEPSYKMNGDDKTKASTGWSIVNS* 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5751662 5762206 - Vvi18g513 Vvi18g513 780216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g513 514 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 507 IPR045042 -
Vvi18g513 514 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Vvi18g513 514 Gene3D - 298 353 IPR023408 -
Vvi18g513 514 Pfam Mechanosensitive ion channel 239 446 IPR006685 GO:0016020|GO:0055085
Vvi18g513 514 Gene3D - 191 296 - -
Vvi18g513 514 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 507 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g513 K22047 - vvi:100259028 998.038