Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g514 ATGGCCCTTGCTGGTTCTATGCACTTGTCCCATGAATTGGGAATTCAGAATTGGCATGGGTACAGTAACCAGCCTAAGATTATGATGGCAAAAGGCCGATTACATCTGCTCAGAATCACTCCCTCATCTCATGCTTTGAGACAGGATGCTTGGAGTCTTCATCTTTCAAATAGTATGGGTGGGTCAATAACTCCTGTATCTTCTAGATGTAATGTTTTCCTGTGCCGATCGTTTCTAGGTGGAGGAAATGAGATTTCAGTTTTAAAATCTGCTGCCTTGGTTTTGACAAGGTCATGTAATGCTTTACAAGGAAGCCCTCTTCTACTTCAATTGGTTCCAGCAGTTAGCATTGTTGCTTTTGCTACATGGGGTCTGGGGCCGCTAATGCGTCTTGGCAGGAACCTTTTCCTCAATAAGACTGATAATAGTAGTTGGAAAAAGAGTAGCACGTATTATGTTATGACCTATTACCTTCGACCTTTGCTGTTATGGATTGGAGCAATGCTTATTTGCAGAGCATTGGATCCAATAATTCTACCTTCAAAAGAGAGCCAGGCTGTTAAGCAACGACTTCTAATTTTTATACGATCATTATCAACGGTGCTAGCCTCTGCCTGTTGTTTATCAAGCTTGATTCAAGAAGTACAAAAATTCTTCATGGAAAGCAATGACTCCAGTGATGCTAGAAATATTGGCTTCCAGTCTGCCGGGAAAGCTGTTTATACTGCAATATGGGTTGCTGCTGTTTCATTGTTCATGGAGTTGCTGGGTTTTCCCACCCAGAAATGGCTAACTGCTGGGGGTCTTGGCACAGTATTGCTTACTCTTGCTGGTCGTGAGATATTCACAAATTTCCTTTCAAGTGTAATGATCCATGCAACACGACCATTTGCTGTGAATGAACGGATTCAAACAAAGATTAAAGATTCTGAAGTTTCTGGTACAGTTGAGCGTGTGGGTTGGTGGTCACCGACAATCATAAGAGGTGATGATCGTGAAGCAGTTCATGTTCCAAACAACAAATTCACAGTGAATGTTGTGAGGAATCTCAGCCAGAGAACTCATTGGCGCATCAAGACACAACTTGCCATCAGCCACTTGGATGTCGATAAGATTAATAATGTTGTAGCTGATATGCGCAAGGTTTTATCCAAAAATCCTCAAATAGAGCAGCAAAGGTTGCATAGAAGAGTGTTTCTGGACTATATCGATCCAGAGAACCAGGCCCTCTTGATCTTGGTATCTTGCTTTGTGAAAACCTCACGTATTGAAGAGTACCTGTGTGTCAAGGAAGCAATACTCTTGGATCTCCTCAGAGTTGTCAGCCATCATCAAGCTCGCCTTGCAACACCCATTCGTACAGTTCAGAAAGAATACGGTGTGGCTGACATGGAAATGGAAAATATTCCATTTGCTGACCCCATATTCACCCGCTCCCAAGCAGCTGCTAACCGTCCACTCCTGCAGATTGAGCCCTCTTATAAAATGAACGGTGATGATAAAATGAAGGCTTCCACAGGTTCAGCACGCCGGAACAAAGAAAAGGATGCCAAGATTAAAGCAAACACAAAATCTGATTCGAAGCCAGGTTCCAAGGCTGGAGCGTCATCAAATAGTGACTCCACAATAGCTGACAACATTGCAGCAACATCAATCACCAACTCCAAACTACAAGGTTTCAGAAACATCAATATCTGA 1698 42.82 MALAGSMHLSHELGIQNWHGYSNQPKIMMAKGRLHLLRITPSSHALRQDAWSLHLSNSMGGSITPVSSRCNVFLCRSFLGGGNEISVLKSAALVLTRSCNALQGSPLLLQLVPAVSIVAFATWGLGPLMRLGRNLFLNKTDNSSWKKSSTYYVMTYYLRPLLLWIGAMLICRALDPIILPSKESQAVKQRLLIFIRSLSTVLASACCLSSLIQEVQKFFMESNDSSDARNIGFQSAGKAVYTAIWVAAVSLFMELLGFPTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFAVNERIQTKIKDSEVSGTVERVGWWSPTIIRGDDREAVHVPNNKFTVNVVRNLSQRTHWRIKTQLAISHLDVDKINNVVADMRKVLSKNPQIEQQRLHRRVFLDYIDPENQALLILVSCFVKTSRIEEYLCVKEAILLDLLRVVSHHQARLATPIRTVQKEYGVADMEMENIPFADPIFTRSQAAANRPLLQIEPSYKMNGDDKMKASTGSARRNKEKDAKIKANTKSDSKPGSKAGASSNSDSTIADNIAATSITNSKLQGFRNINI* 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5765988 5795580 - Vvi18g514 Vvi18g514 780217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g514 565 SUPERFAMILY Sm-like ribonucleoproteins 281 351 IPR010920 -
Vvi18g514 565 Gene3D - 160 295 - -
Vvi18g514 565 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 555 IPR045042 -
Vvi18g514 565 MobiDBLite consensus disorder prediction 526 542 - -
Vvi18g514 565 MobiDBLite consensus disorder prediction 504 525 - -
Vvi18g514 565 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 555 - -
Vvi18g514 565 MobiDBLite consensus disorder prediction 494 542 - -
Vvi18g514 565 Gene3D - 296 349 IPR023408 -
Vvi18g514 565 Pfam Mechanosensitive ion channel 238 446 IPR006685 GO:0016020|GO:0055085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g514 K22047 - vvi:100264429 1092.8