Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g515 ATGGAAGTTTCCCGTGCGGAATGTGTTCGCGTTGCGGTTAACATAAGACCACTCATTACATCAGAGCTTCTCATTGGCTGTACAGATTGCATAACAGTGGTTCCTGGAGAGCCACAGAATGATTTTAGCTTTGGTGTGTTTTTTTGTTTGATTTGTAATTGTTATTGGGTGCACGACCAGGTTCAAATTGGATCCCATGCATTCACATTTGATTATGTTTACGGCAGCACTGGATCTCGATCTTCTGCAATATTTGATGACTGTATTTATCCACTCCTTGATGCACTTTTCCATGGCTACAATGCAACAGTTCTTGCATATGGCCAGACGGGCTCGGGGAAAACATACACAATGGGAACCAATTATACAGGAGAAGAAAGTAGTGGTGGAATTATACCAAAAGTTATGGAAAGTATATTTTCAAGAGTGGAGGCCATGAAAGACTCCACCGAATTTTTAATTAGAGTATCATTTATCGAGATTTTTAAGGAAGAAGTATTTGATTTGCTTGACCCAAATTCATCAGCTACCTCCAAAGTTGAAGGGGTATGTGTAACTAAGCCTACTGGACCAGCAAGAGTGCCTATACAAATTAGAGAAACAGTAAGCGGGGGCATAACCCTTGCTGGCGTGACAGAAGCAGAAGTTAGGACAAAAGAAGAAATGGCATCATACCTATCACACGGTTCCACAGCTCGTGCTACTGGAAGTACTAATATGAATAGTCAATCAAGTCGCTCGCATGCCATTTTCACAATATCTATGGAGCAAAAGAAAATTGCTCGTGTTGGAGTAAGTAATGATGATGTGGGAGATGATATCCTATGTGCAAAACTCCATTTAGTGGATCTTGCTGGTTCTGAACGAGCAAAACGGACAGGAGCGGATGGGATGCGATTTAAAGAAGGAATTCATATTAATAAGGGATTGCTTGCTCTTGGCAACGTGATAAGTGCCTTGGGAGATGAGAAGAAGCGGAAAGAAGGAGGTCATGTTCCATATCGTGATAGCAAGTTTAAACTCTTAAAGGTTGTTTTTGATTCTCTTGGAGGAAACAGCAAAACCGTCATGATTGCTTGTGTTAGTCCTGCTGATACAAATGCAGAAGAGACCTTAAACACTTTGAAGTATGCAAATCGTGCTCGAAATATTCAGAACAAGGCAGTTATCAACCGTGATCCAATGGCAGCTCAAATGCAAAGAATGCGGAGCCAAATTGAGCAATTACAGTCTGAGCTTCTTTATTTCCGTGGCGATGCTGGTGCTCCATTTGAGGAACTTCAGATTCTCAAGCACAAAATTTCTTTGCTTGAAGAGAGCAATGCTGAGCTACAAAGGGAGCTTCAAGAGCGCCGAATCACCTGTGATCATTTAACACAACGTGCTCTTGATGCCCAGGTTGAAAAAGACAAATTGATTATGAAAATTGAATCAGCCAGAAATGGGAAATCTTGGGATGAGATGGAGTCTGATTCAGATCAGAATTTTAGTCTGCTAAAATCCTATGTGTCAAAAATTCAAGAATTAGAGGGTGAATTGTTGCACCTACAAAGTTTGAATAGCTCAAAACATAGTGATTTTGTTGTTGATGGCACTGACTTGGATGATGATAGTCTCCGCGCAAAAAATGCATATTTCAGAAGCCTTAATGAGCTTTCATCAGCTTGTGATACAAAAGGTGAGATTGAAGATGATGAAAAGGAGTTAGAATACACTTCCCTTCAAGAAAAATTTGATATGGAGCTCAAAGAGTTGGACAAAAAACTTGAACAAAAAGAGGCTGAAATGAAGCGGTTTGCAAGTGCTGATACATCAGTTCTTAAACTACATTATGAGAAGAAACTTCTGGAATTGGAACAAGAGAAGAAAGCGTTGCAGAAAGAGATTGAGGAGCTGAGGCATGACCTTGCAAGTATTTCTTCCACTTCTGATGATGGTGCCCAAAAATTAAAGGAAGATTACCTTCAAAAATTGAATGTACTTGAAAAACAGGTTTCAGAGTTGAAGAAGAAACAAGATGCGCAATCTCAACTCTTAAGACAAAAGCAAAAAAGTGATGAGGCTGCAAAACGGTTACAGGATGAGATTCAGAGAATAAAATCCCAAAAGGTTCAATTGCAACATAAGATCAAGCAAGAATCTGAGCAGTTTAGGTTATGGAAGGCATCGCGGGAAAAAGAAGTTCTTCAGCTTAAGAAAGAGGGAAGGAGGAACGAGTATGAGATGCATAAGCTATTAGCTTTAAACCAAAGGCAAAAGATGGTTTTGCAACGAAAGACTGAAGAAGCTTCTATGGCAACAAAGAGACTAAAAGAACTATTAGAATCTCGAAAGGCATCATCACGCGAAACATTAGGTGCTGGGAATGGAAATGGTCCTGGAGTTCAGGCCCTGATGCAGGCAATTGAGCATGAGCTTGAAGTCACAGTACGGGTACATGAAGTGCGTTCTCAATATGAGCATCAAATGGAAGAGAGAGCTAGGATGGCCAGGGAGGTTGCAAAACTGAAGGAAGAAGCAGATATGCTGAAGCAAAAAGATTTTGGAAGTTTCCCTGAGACAATGTCTCCTGGTGCAAGAAATTCTAGGATTTTTGCTCTTGAAAACATGCTCACTACATCGTCTAGCACCCTGGTTTCTATGGCATCACAGTTATCTGAAGCAGAAGAGCGTGAACGGGTCTTTAGCGGCAGGGGACGCTGGAACCAAGTTCGATCTCTTGCTGAAGCAAAAAATATGATGAATTATCTGTTCAACTTAGCATCCTCATCTAGGTGTAAGTTATGGGATAAAGAACTTGACAGCAGGGAGAAAGATTCAGAAATAAGAGACTTGAAGGAAAAAGTGGTCAAGCTCAGTGGTTTGGTTAGACAACTGGAAATACAAAAGGCTGAACTTCTTCATCGAGAGAAGCTACAGAAATTAGCTTCAAAGAAGCATGACATGGATAATGCGGGTCGGAAGTATGATTTTCGTGAGGGACCTCGGCGGTCTGTGATTTTGTTGGAGGACATGGATACATCTGAATCAGAACATTCTAGCACAGACAGTGCCGATGATGATGACTGGGTAGAATCAGGAAAAAGGCCAAGGAAGAAAAGGAATTCCAAAGCTGGAGGTCAATCACGTGTAGGTTCGGATATCAGTAGTTCAGAAAATTTGAGAACGGAAAATTCAGGAATATGTTGCTCTTGTAGTAAATCATCTTTTTGTAAACTAAAGAAATGTGAGTGTCGTGCTGCTGGAGGCACTTGTAGGGACTCATGCAGCTGTGCACCTAATAAGTGCACTAACAGAGAAACAATTAAGGTTGAGGAGTTGGATGACTTCCTGCAATCAGCGGTTGCTGAAGGCATTGGGAACTTGTCAGGCAGTGATGATACACAGAAGTACCACGACCTTGCTTCTCATGGTGCAATGCTGCTCCAGAGTGCACTAGTTGATGAGCCTGCTGAGGCAAATGATGATTGTGAATCCAAAAGGAAGCCTTTATCCGAAATTGGGAACAAAATGGCCAGAGCAAAGGCACCTAAGCCTAATCCAAGAAAGAAATGGCGAAAATCAGTAATTCAGCTAGTTTCTGTAGCCCCACCTTCGTCGCAGCCAGAGAATACTGAAGCTCCCAAGAAGGCAGAGAACACTGCAGTTGAGGTAGACATCCCTTTGAAGTTACCCAGGGCTATGAGATCGGCAGCATCAAATGGCAACCCCTTTAGAGTTAGAAATTCTGATCAGCCAGACGAATCAGCAGCCAACAACAAGGAGACTGTCGCTTCTGCCTCAAGAAGTCCAGTCCGGCAGGCAAGAACATTGGATGAGAAAGAGAACTATGGTCCTTAA 3840 41.77 MEVSRAECVRVAVNIRPLITSELLIGCTDCITVVPGEPQNDFSFGVFFCLICNCYWVHDQVQIGSHAFTFDYVYGSTGSRSSAIFDDCIYPLLDALFHGYNATVLAYGQTGSGKTYTMGTNYTGEESSGGIIPKVMESIFSRVEAMKDSTEFLIRVSFIEIFKEEVFDLLDPNSSATSKVEGVCVTKPTGPARVPIQIRETVSGGITLAGVTEAEVRTKEEMASYLSHGSTARATGSTNMNSQSSRSHAIFTISMEQKKIARVGVSNDDVGDDILCAKLHLVDLAGSERAKRTGADGMRFKEGIHINKGLLALGNVISALGDEKKRKEGGHVPYRDSKFKLLKVVFDSLGGNSKTVMIACVSPADTNAEETLNTLKYANRARNIQNKAVINRDPMAAQMQRMRSQIEQLQSELLYFRGDAGAPFEELQILKHKISLLEESNAELQRELQERRITCDHLTQRALDAQVEKDKLIMKIESARNGKSWDEMESDSDQNFSLLKSYVSKIQELEGELLHLQSLNSSKHSDFVVDGTDLDDDSLRAKNAYFRSLNELSSACDTKGEIEDDEKELEYTSLQEKFDMELKELDKKLEQKEAEMKRFASADTSVLKLHYEKKLLELEQEKKALQKEIEELRHDLASISSTSDDGAQKLKEDYLQKLNVLEKQVSELKKKQDAQSQLLRQKQKSDEAAKRLQDEIQRIKSQKVQLQHKIKQESEQFRLWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLESRKASSRETLGAGNGNGPGVQALMQAIEHELEVTVRVHEVRSQYEHQMEERARMAREVAKLKEEADMLKQKDFGSFPETMSPGARNSRIFALENMLTTSSSTLVSMASQLSEAEERERVFSGRGRWNQVRSLAEAKNMMNYLFNLASSSRCKLWDKELDSREKDSEIRDLKEKVVKLSGLVRQLEIQKAELLHREKLQKLASKKHDMDNAGRKYDFREGPRRSVILLEDMDTSESEHSSTDSADDDDWVESGKRPRKKRNSKAGGQSRVGSDISSSENLRTENSGICCSCSKSSFCKLKKCECRAAGGTCRDSCSCAPNKCTNRETIKVEELDDFLQSAVAEGIGNLSGSDDTQKYHDLASHGAMLLQSALVDEPAEANDDCESKRKPLSEIGNKMARAKAPKPNPRKKWRKSVIQLVSVAPPSSQPENTEAPKKAENTAVEVDIPLKLPRAMRSAASNGNPFRVRNSDQPDESAANNKETVASASRSPVRQARTLDEKENYGP* 1280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5807851 5821053 + Vvi18g515 Vvi18g515 780218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g515 1279 PANTHER KINESIN-LIKE PROTEIN KIN-4C 5 1255 - -
Vvi18g515 1279 Coils Coil 942 962 - -
Vvi18g515 1279 Gene3D Kinesin motor domain 5 417 IPR036961 -
Vvi18g515 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 417 IPR027417 -
Vvi18g515 1279 Coils Coil 756 776 - -
Vvi18g515 1279 Coils Coil 819 846 - -
Vvi18g515 1279 CDD KISc_KIF4 8 385 - -
Vvi18g515 1279 Coils Coil 608 642 - -
Vvi18g515 1279 MobiDBLite consensus disorder prediction 1153 1168 - -
Vvi18g515 1279 MobiDBLite consensus disorder prediction 1193 1208 - -
Vvi18g515 1279 MobiDBLite consensus disorder prediction 1235 1266 - -
Vvi18g515 1279 MobiDBLite consensus disorder prediction 1004 1054 - -
Vvi18g515 1279 MobiDBLite consensus disorder prediction 1004 1029 - -
Vvi18g515 1279 MobiDBLite consensus disorder prediction 1039 1054 - -
Vvi18g515 1279 PRINTS Kinesin heavy chain signature 99 120 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g515 1279 PRINTS Kinesin heavy chain signature 238 255 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g515 1279 PRINTS Kinesin heavy chain signature 278 296 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g515 1279 PRINTS Kinesin heavy chain signature 334 355 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g515 1279 Coils Coil 575 602 - -
Vvi18g515 1279 ProSitePatterns Kinesin motor domain signature. 277 288 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi18g515 1279 SMART kinesin_4 6 392 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g515 1279 MobiDBLite consensus disorder prediction 1152 1279 - -
Vvi18g515 1279 Pfam Kinesin motor domain 59 384 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g515 1279 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 5 1255 - -
Vvi18g515 1279 Coils Coil 427 461 - -
Vvi18g515 1279 ProSiteProfiles Kinesin motor domain profile. 8 384 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g515 1279 Coils Coil 651 716 - -
Vvi18g515 1279 Coils Coil 499 519 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g515 - - - vvi:100247280 2290.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g515 . . . . Bpe02g00139 . . . . . Cma01g01646 . . . Sed05g1562 . Cpe07g00170 Bhi04g01382 Tan02g2480 Cmetu04g1739 . Hepe10g0431 . Lcy13g1480 . . . . . . . Cone4ag1297 Cone7ag0858 . . Lsi04g02279 Csa03g04492 . . . . Bda11g00799 . . . . . . Cmo01g01696 . . . . . . . . . . . . . . Cla11g01423 Cam11g1479 Cec11g1509 Cco11g1505 Clacu11g1640 Cmu11g1458 Cre11g1876 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009556 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32