Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g518 ATGAAGACATCGGCCACTGATCCTTCTACGAAGAAGGCCAAGGAGGCAAAGCTTTGGGGCGGACGCTTCGAAGAGGGCGTCACGGACGCGGTCGAGCGCTTCACCGAGTCCATTTCTTTCGACAAGGCTCTCTACAAACAAGATATTATGGGGAGTAGGGCTCATGCCTCAATGCTTGCTCACCAGGGATTGATCAGTGTTAGTGATAGGGATAGTATTTTGCAAGGTCTTGATAACATAGAGAGGCGCATTGAAGATGGTGAGTTTGTGTGGAGGACTGACAGGGAGGATGTGCACATGAACATTGAAGCAGCACTTACTGATTTGATTGGTGAGCCTGCGAAGAAGCTCCACACAGCTAGGAGTCGTAATGATCAAGTCTTGACTGATTTTCGCCTGTGGTGTCGTGATGCTATTGATAACATTGTTGCTCGCATCGAACATCTTCAGGTTGCATTAGTTACCTTGGCTATGAAGAATGAGAACTTGATTGTTCCTGGTTATACACACCTACAAAGGGCACAACCAATTTTGCTGCAGCATCTTCTCTTAGCGTATGTTGAGCAGCTTGATCGTGATGCTGGTCGTCTACTGGATTGCAGACAGAGGCTGAATTTCTGCCCCCTAGGTGCATGTGCATTGGCTGGCACTGGCCTTCCCATTGATAGGTTTATGACTTCGCATGATTTAGGATTCAATGCTCCCATGAGAAACAGCATTGATGCAGTTTCAGACCGAGATTTTGTGTTGGAGTTTCTTTCTGCTAATTCCATCACAGCCATTCATCTTTCTCGACTTGGTGAAGAATGGGTATTGTGGGCTTCAGAGGAATTTGGATTTCTCACCCCAAGTGACTCTGTTTCAACCGGAAGTAGCATAATGCCTCAGAAGAAAAACCCAGATCCCATGGAACTGGTTCGTGGAAAATCTGCTAGAGTTGTAGGAGATCTGGTTACTCTTCTCGTATTGTGCAAGGGCCTTCCACATGCCTATAATCGTGATTTGCAGGAAGATAAAGAACCTACATTTGACAGCACTAAGACAATAATAGGGATGCTTGAAGTGTGTGCTGAGTTTGCACAGAACATTACCTTTAATCGTGAGAAAATAAAAAAAGCATTACCTGCTGGTCATCTTGATGCCACAACACTTGCAGACTATCTCGTGAAGAAGGGAATACCCTTCAGAACTTCTCATGACATAGTTGGAAAGTCTGTTGCCTTGTGTGTCTCAAAAAATTGCCAACTCCAGGACCTGAGTCTTGATGAATTGAGAAGCGTAAATCCAGTGTTTGACGAGGATGTATATGAGTTCCTTGGAGTAGAAAATGCAGTAAAGAAATTCTGCTCGTATGGTTCCACAGGTTCAGAATGTGTTGCAGAACAACTTGACTTCTGGGTTACTAAGCTTCAAATCAACACAGCTGGACATAAATAG 1437 44.68 MKTSATDPSTKKAKEAKLWGGRFEEGVTDAVERFTESISFDKALYKQDIMGSRAHASMLAHQGLISVSDRDSILQGLDNIERRIEDGEFVWRTDREDVHMNIEAALTDLIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDNIVARIEHLQVALVTLAMKNENLIVPGYTHLQRAQPILLQHLLLAYVEQLDRDAGRLLDCRQRLNFCPLGACALAGTGLPIDRFMTSHDLGFNAPMRNSIDAVSDRDFVLEFLSANSITAIHLSRLGEEWVLWASEEFGFLTPSDSVSTGSSIMPQKKNPDPMELVRGKSARVVGDLVTLLVLCKGLPHAYNRDLQEDKEPTFDSTKTIIGMLEVCAEFAQNITFNREKIKKALPAGHLDATTLADYLVKKGIPFRTSHDIVGKSVALCVSKNCQLQDLSLDELRSVNPVFDEDVYEFLGVENAVKKFCSYGSTGSECVAEQLDFWVTKLQINTAGHK* 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5833779 5844784 - Vvi18g518 Vvi18g518 780221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g518 478 Gene3D - 37 244 IPR024083 -
Vvi18g518 478 PANTHER ARGININOSUCCINATE LYASE 28 473 IPR009049 GO:0004056|GO:0042450
Vvi18g518 478 PRINTS Argininosuccinate lyase family signature 116 138 - -
Vvi18g518 478 PRINTS Argininosuccinate lyase family signature 157 177 - -
Vvi18g518 478 PRINTS Argininosuccinate lyase family signature 208 224 - -
Vvi18g518 478 PRINTS Argininosuccinate lyase family signature 246 270 - -
Vvi18g518 478 PRINTS Argininosuccinate lyase family signature 290 306 - -
Vvi18g518 478 PRINTS Argininosuccinate lyase family signature 325 344 - -
Vvi18g518 478 ProSitePatterns Fumarate lyases signature. 290 299 IPR020557 GO:0003824
Vvi18g518 478 PANTHER ARGININOSUCCINATE LYASE 28 473 - -
Vvi18g518 478 TIGRFAM argH: argininosuccinate lyase 18 466 IPR009049 GO:0004056|GO:0042450
Vvi18g518 478 Pfam Lyase 21 315 IPR022761 -
Vvi18g518 478 Pfam Argininosuccinate lyase C-terminal 380 445 IPR029419 -
Vvi18g518 478 SUPERFAMILY L-aspartase-like 18 469 IPR008948 GO:0003824
Vvi18g518 478 Hamap Argininosuccinate lyase [argH]. 17 468 IPR009049 GO:0004056|GO:0042450
Vvi18g518 478 Gene3D Fumarase/aspartase (Central domain) 134 463 - -
Vvi18g518 478 Gene3D - 375 447 - -
Vvi18g518 478 CDD Argininosuccinate_lyase 37 470 IPR009049 GO:0004056|GO:0042450
Vvi18g518 478 PRINTS Fumarate lyase superfamily signature 117 135 IPR000362 -
Vvi18g518 478 PRINTS Fumarate lyase superfamily signature 162 180 IPR000362 -
Vvi18g518 478 PRINTS Fumarate lyase superfamily signature 246 273 IPR000362 -
Vvi18g518 478 PRINTS Fumarate lyase superfamily signature 290 306 IPR000362 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g518 K01755 argH, ASL; argininosuccinate lyase [EC:4.3.2.1] - vvi:100262660 956.436
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g518 . Blo12g00732 . Bda03g00456 . . Bma04g00431 Bma01g02585 . Cmo12g00155 . . . Car12g00183 Sed01g4279 . Cpe07g00171 Bhi04g01383 Tan02g2479 Cmetu03g0752 . Hepe10g0432 . Lcy13g1481 . . . . . . . . . . . Lsi04g02280 Csa03g04493 Chy04g00207 . . . Bda11g00800 . . . . . Sed05g1560 . . Cma12g00201 . . . . . Bhi09g02498 Tan01g3852 Cmetu04g3041 . Hepe01g2170 Mch11g0709 . Cla11g01425 Cam11g1480 Cec11g1510 Cco11g1506 Clacu11g1641 Cmu11g1459 Cre11g1877 . . . Cme04g00237
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002720 2 2 1 3 1 1 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 1 54