Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g52 ATGGCGTTAAAAGTCCTTTCTGCCCTTGACACTGCTAAAACCCAGTATTACCACTTCAAGGCCATCATCATCGCCGGCATGGGTCTCTTTACCGACGCCTACGACCTCTTCTGTATTCCTCCCATCATGAAACTGATCGGACGGATCTACTACGAGGATGAGCCAAACCTTGAGAAGCAATACGAAACCCCAGCTTTTGTGGTCTCCCTCTTGGTAGGGCTGGCGCTGCTGGGGACTGTGATTGGTCAGCTCGTCTTCGGCCGCCTCGGTGATCAGATCGGGAGGCGGCGCGTATACGGGCTCTCATTGATGCTCATGGTGCTGAGCTCCATCGGATGCGGCTTCTCCATCTGCAGGACTCGGAACTGCGTGTTGGGGACTTTGGGATTCTTCAGGTTCATGCTCGGCATCGGGATTGGCGGTGATTATCCGTTGTCGGCGACGATCATGTCGGAGTTCGCCAACAAGAAGACGCGTGGCTCGTTTATCGCCGCTGTTTTCTCGATGCAGGGCTTTGGGATTCTCGTCAGCTCGACCGTAACGATGGTGGTTTGTTCGATATTCAATGCTGCGTCGAATGCACAGTACAATCACACGCCGGAGGAGGCGGACTTAGTATGGCGGCTGATTCTGATGTTCGGCGCAATTCCGGCTGCGATGACGTATTATTGGCGTATGATGATGCCTGAAACTGCCAGGTACACGGCTCTGGTGGAACAAAATGTCCTTCAAGCAGCAAAGGACATGGAGAAAATCTCTTCTCTTGCGCCACTACTTGGTTTCTAG 786 53.18 MALKVLSALDTAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLIGRIYYEDEPNLEKQYETPAFVVSLLVGLALLGTVIGQLVFGRLGDQIGRRRVYGLSLMLMVLSSIGCGFSICRTRNCVLGTLGFFRFMLGIGIGGDYPLSATIMSEFANKKTRGSFIAAVFSMQGFGILVSSTVTMVVCSIFNAASNAQYNHTPEEADLVWRLILMFGAIPAAMTYYWRMMMPETARYTALVEQNVLQAAKDMEKISSLAPLLGF* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 579116 582064 + Vvi18g52 Vvi18g52 779755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g52 261 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-9-RELATED 1 254 - -
Vvi18g52 261 Gene3D MFS general substrate transporter like domains 17 251 IPR036259 -
Vvi18g52 261 ProSitePatterns Sugar transport proteins signature 2. 134 159 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vvi18g52 261 Pfam Sugar (and other) transporter 23 251 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vvi18g52 261 ProSiteProfiles Major facilitator superfamily (MFS) profile. 21 261 IPR020846 GO:0022857
Vvi18g52 261 SUPERFAMILY MFS general substrate transporter 9 234 IPR036259 -
Vvi18g52 261 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 1 254 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g52 K08176 - vvi:100251317 491.115