Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g521 ATGGTTGAGATGCCAAAGATGCGCAAAAAGGGCACAATCAGTGAGGAAGACGTCTCCGCTCTATTGCAAAGGTATACGCCGACTGCGGTGCTAGCACTGCTTCAAGAAGTGGCACAGTTACCGGATGTGAAGATCGATTGGAATGCGTTGGTGAATAAGACTTCAACTGGGATTTCTAATGCCAGAGAGTATCAGATGCTCTGGCGCCATTTGGCCTATGGCCACGCATTGCTCGAAAAATTGGAAGATGGGGCTCAGCCGTTGGATGATGATAGTGACTTGGAATATGATTTAGAAGCTTTCCCCAGCATTAGTACTGAAGCTTCAGCAGAGGCTACTGCATGTGTGAAAGTACTGATTGCTTCCAGTTTACCAAGTGATTCCAGTCTCCCAAACAGCTCAATGGTTGAGGCTCCATTGACTATAAATATACCCTGTGGCCAGTCATCCAGAGCTCCTTCAGAATATTCACGACTTTCTGGTTCCATGCAAGGGACAAACATCACTATTCCAGTTTCCGTTCAAAAATCTGAAGGATTTGATGCGAATGGATCAACAAGTGGCAGTCTTCCAGCTCGAAAGAAACGAAAACCATGGTCATCAGACGAGGATAAGGAACTGATTGCTGCTGTACAAAAATGTGGTGAAGGGAATTGGGCAAATATCTTGAAAGGGGACTTCAAGGGGGATAGATCTGCTTCACAGCTATCTCAGAGGTGGACCATTATCAGGAAGAAGCACAAAAACTTGAATGTGGGTGGAGCTAACTCAAACGGCTCACAGCTCTCTGAGGCGCAGTTGGCTGCTCGTCATGCGATGTCCCTGGCCCTTGATATGCCAGTGAAAAACTTAACGACGTCTTCTTCAATTGCAGGAACAAATCCAAATGCTACATCCAGTAACTCAGCTTTTCCTGCTACCCCTGCTGAAGCTTTGCCGGCTAGCACCAATATTTCACAAGCCCAACAACTATCTCAACAAGGCCCCGTGTCAACTTTATCTCAAATGGGATCATTGGGTTCTGCACCAAAATCCCGGGCAACCTCAAAAAAAACATCAGCAAAGTCTACTTTCAGCTCACAATCTATGCTAAAAGCTACTGCAGTTGCTGCTGGGGCCCGCATTGCTACCCCATCAGCTGCTGCATCACTGCTAAAAGATGCACAATCAAGGAATGCTGTCCATATCATGCCTGGAGGGAGTACATTAATCAAATCATCTGTTGCTGGTGGTGCAAACCCATTACCTGCCAACCACTTGGGAGCTCATCCTAATGTACACTACAAGTGTGCTGGCCCACCAACTACATCACTTTCTACCTATTCTGCTGTTGCACCAAGTGTGTCACGAACTGGTTCTGCAAAACCTGCAGCACCAGGTGGTCAGCTTGCTCCATCCCCTTCTGCCACATCTGTAAATATTTCTTCTGAACAAACTAATGCAGCCACCACTAGTCTGGCTGTTGAATATCCAGCGAAGCAGGAGACTAAAACTAGTGAAGAGACAAAAGTTCCTATCTCAGGCAATGTACCAAAAGCAAAAGTCCTAGAAGATCAAGCTTGTGTTTCAAGCAACACTGCAAGTGAGCAAGTTCAGGAAGATCAAGCAACTTTGTCAAACACAGAAGTAGTTCTCGAAAATAAAAAAGCTATGGTTTCAGATACTAAATGTTTGTTAAAGACAGAAACAGCTGAGAATGATGGTGAGGTTGCTGAAAGTCAAAATGTGAATGATAATAAGATAATGGATTTTCGAGTTGCAGGAGAATGTGAGAATCAATCTGTGGCTAACGAGAATTCAGGGAACCAAAACGCGAATGAGAAACAGACAGATTTACCAAACACAGCAACAGATTGTGGTGAGAAATCGGATGAGGTGGATGTGTTTGCCAATGGTGTAAGTTATTCCCTTTTCTTTTCCTGTTGA 1926 44.81 MVEMPKMRKKGTISEEDVSALLQRYTPTAVLALLQEVAQLPDVKIDWNALVNKTSTGISNAREYQMLWRHLAYGHALLEKLEDGAQPLDDDSDLEYDLEAFPSISTEASAEATACVKVLIASSLPSDSSLPNSSMVEAPLTINIPCGQSSRAPSEYSRLSGSMQGTNITIPVSVQKSEGFDANGSTSGSLPARKKRKPWSSDEDKELIAAVQKCGEGNWANILKGDFKGDRSASQLSQRWTIIRKKHKNLNVGGANSNGSQLSEAQLAARHAMSLALDMPVKNLTTSSSIAGTNPNATSSNSAFPATPAEALPASTNISQAQQLSQQGPVSTLSQMGSLGSAPKSRATSKKTSAKSTFSSQSMLKATAVAAGARIATPSAAASLLKDAQSRNAVHIMPGGSTLIKSSVAGGANPLPANHLGAHPNVHYKCAGPPTTSLSTYSAVAPSVSRTGSAKPAAPGGQLAPSPSATSVNISSEQTNAATTSLAVEYPAKQETKTSEETKVPISGNVPKAKVLEDQACVSSNTASEQVQEDQATLSNTEVVLENKKAMVSDTKCLLKTETAENDGEVAESQNVNDNKIMDFRVAGECENQSVANENSGNQNANEKQTDLPNTATDCGEKSDEVDVFANGVSYSLFFSC* 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5855908 5869152 - Vvi18g521 Vvi18g521 780224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g521 641 MobiDBLite consensus disorder prediction 595 616 - -
Vvi18g521 641 MobiDBLite consensus disorder prediction 464 486 - -
Vvi18g521 641 Gene3D - 191 250 - -
Vvi18g521 641 ProSiteProfiles Myb-like domain profile. 191 244 IPR001005 -
Vvi18g521 641 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 624 - -
Vvi18g521 641 Pfam Myb-like DNA-binding domain 196 240 IPR001005 -
Vvi18g521 641 CDD SANT_TRF 197 245 - -
Vvi18g521 641 SUPERFAMILY Homeodomain-like 193 245 IPR009057 -
Vvi18g521 641 SMART sant 195 246 IPR001005 -
Vvi18g521 641 MobiDBLite consensus disorder prediction 287 308 - -
Vvi18g521 641 MobiDBLite consensus disorder prediction 320 359 - -
Vvi18g521 641 MobiDBLite consensus disorder prediction 449 486 - -
Vvi18g521 641 MobiDBLite consensus disorder prediction 177 203 - -
Vvi18g521 641 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 248 IPR017930 -
Vvi18g521 641 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 624 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g521 - - - vvi:100245507 1161.36
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g521 . . Bda01g00909 . . . . . . Cmo12g00157 . Cma09g00595 . Car12g00185 Sed04g0197 Cpe06g00456 Cpe07g00173 Bhi04g01388 Tan02g2476 Cmetu03g1900 . Hepe10g0434 . Lcy13g1484 . . . . . . . Cone4ag1295 Cone7ag0860 . . . . Chy04g00204 . . . . . Bpe02g01148 Bpe14g00483 . . Sed13g1535 . Cmo09g00581 Cma12g00203 . . Car09g00526 . . Bhi09g02501 Tan01g3854 . . . Mch11g0711 . Cla11g01427 Cam11g1483 Cec11g1513 Cco11g1509 Clacu11g1644 Cmu11g1462 Cre11g1880 . . . Cme04g00235
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005998 1 1 1 0 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14335 PF00249 Myb_DNA-binding 1.80E-07 CL0123 Vvi TF