Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g522 ATGTCTTCTGAATCCAATCTGATTAACACTGTGGAGGCTTTTCTCGGAGTGTCGTTGGGCTCGGAATCGGCGGTTGTGATCCTGACGACGACGGTGGCGGTGATTTTGGGGTTGTTGATCTTCGTGTGGAGAATATCGTCGGATCGAGGAAGGGATGTGAAGCCGCTCGTGGTTCCGAAGGCGGTGGCGATTCCAGCGGAAGAGGATGAGGCAGAGGCTGCGGTGGGGAAAACTAAGGTCACTGTCTTCTTTGGTACTCAGACTGGAACTGCCGAGGGTTTTGCCAAGGCTTTAGCCGAAGAGATTAAGGCAAGATACGACAAAGCAACCATTAAAGTTGTTGACCTGGATGACTATGCTGTGGATGATGATCAATATGAAGAAAAACTGAAGAAAGAGGCTTTGGCTTTTTTCATGTTGGCCACTTATGGAGATGGAGAGCCAACTGATAATGCTGCTAGATTTTACAAATGGTTTACTGAGGGAAAAGAGAGGGAGGCCTGGCTTCAACAACTCACATATGGTGTTTTTGGTCTGGGTAACCGCCAATATGAACATTTTAACAAGATAGCAAAGGTAGTGGATGAACTACTAAGTGAGCAAGGAGCAAAACGTCTTGTTCCAGCTGGTCTTGGTGATGACGATCAGTGCATTGAGGATGATTTTGCTGCTTGGAGAGAATTACTGTGGCCAGAGTTAGATCTATTACTCCGAGATGAAGATGATATAAGTGCTGTGTCCACTCCATATACAGCTGTTATCCCTGAATACAGGGTAGTTATTCATGATCCTATTGTTACATCTTGTGAAGATAAATTCCTAAATATGGCAAATGGGAATGCTTCTTTTGATATTCACCATCCATGCAGAGTTAATGTTGCAGTTCAGCGAGAGCTTCACACACTGGAGTCTGATCGTTCCTGCATACATCTGGAGTTTGACACATCAGGCACTGGTATAACATATGAAACTGGAGACCATGTGGGCGTTTATGCTGAGAATTGTGATGAAACTGTTGAAGAAGCAGGAAGGTTGTTGGGTCAACCTCTAGATTTGCTTTTTTCGATTCACACTGATAAAGATGATGGCACGTCCTTAGGCAGCTCATTGCCACCTACTTTTCCTGGTCCTTGCACCATTCGCACTGCACTTGCATGTTATGCAGATCTCTTGAACTCCCCACGGAAGGCTGCATTAAGTGCATTGGCTGCTCATGCAATTGAGCCTGGTGAAGCAGAAAGACTAAAGTTCTTGGCATCACCTCAGGGGAAGGATGAGTACTCACAATGGGTTGTTGGAAGTCAGAGGAGTCTCCTTGAGGTAATGGCTGAGTTCCCTTCAGCGAAACCTCCCCTCGGTGTTTTCTTTGCAGCAATTGCCCCTCGATTGCAGCCTCGTTACTATTCAATCTCATCCTCTCCTAGGTATGCGTCCCATAGAGTTCATGTAACCTGTGCTTTGGTCTATGGTCCAAGTCCCACAGGCAGAATTCACAAAGGGGTGTGTTCAACCTGGATGAAGAATGCAGTTTCTTTAGAGAAAAGCCATAACTCTAGCTGGGCTCCTATTTTTATTAGGCCATCAAATTTCAAATTACCTGTTGATCCTTTGACTCCAATTATCATGGTGGGACCTGGTACTGGCTTGGCACCTTTCAGAGGATTTCTACAGGAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATGGATTTCATTTATGAGGATGAACTCAATAATTTTGTTGAACAAGGTATTCTGTCTGAGTTGATTTTGGCATTTTCACGAGAGGGGCCACAAAAGGAGTATGTGCAACATAAGATGATGGATAGAGCATCATACATATGGAATATAATCTCTCAGGGGGGATATCTTTATGTTTGTGGTGATGCCAAGGGTATGGCCAAAGATGTTCATCGAACTTTGCATACCATTGTCCAGGAGCAGGAAAATGTGGAGTCATCCAAGGCGGAGGCTATAGTGAAGAAACTTCACACAGAAGGACGTTATCTTAGAGATGTCTGGTGA 2067 44.99 MSSESNLINTVEAFLGVSLGSESAVVILTTTVAVILGLLIFVWRISSDRGRDVKPLVVPKAVAIPAEEDEAEAAVGKTKVTVFFGTQTGTAEGFAKALAEEIKARYDKATIKVVDLDDYAVDDDQYEEKLKKEALAFFMLATYGDGEPTDNAARFYKWFTEGKEREAWLQQLTYGVFGLGNRQYEHFNKIAKVVDELLSEQGAKRLVPAGLGDDDQCIEDDFAAWRELLWPELDLLLRDEDDISAVSTPYTAVIPEYRVVIHDPIVTSCEDKFLNMANGNASFDIHHPCRVNVAVQRELHTLESDRSCIHLEFDTSGTGITYETGDHVGVYAENCDETVEEAGRLLGQPLDLLFSIHTDKDDGTSLGSSLPPTFPGPCTIRTALACYADLLNSPRKAALSALAAHAIEPGEAERLKFLASPQGKDEYSQWVVGSQRSLLEVMAEFPSAKPPLGVFFAAIAPRLQPRYYSISSSPRYASHRVHVTCALVYGPSPTGRIHKGVCSTWMKNAVSLEKSHNSSWAPIFIRPSNFKLPVDPLTPIIMVGPGTGLAPFRGFLQERLALKEDGVQLGPALLFFGCRNRRMDFIYEDELNNFVEQGILSELILAFSREGPQKEYVQHKMMDRASYIWNIISQGGYLYVCGDAKGMAKDVHRTLHTIVQEQENVESSKAEAIVKKLHTEGRYLRDVW* 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5872896 5891275 - Vvi18g522 Vvi18g522 780225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g522 688 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 286 533 IPR017927 GO:0016491
Vvi18g522 688 CDD CYPOR 284 688 - -
Vvi18g522 688 Gene3D Translation factors 288 531 - -
Vvi18g522 688 PIRSF P450R 17 688 IPR023208 GO:0003958
Vvi18g522 688 Pfam FAD binding domain 282 505 IPR003097 GO:0016491
Vvi18g522 688 Gene3D - 52 245 IPR029039 -
Vvi18g522 688 ProSiteProfiles Flavodoxin-like domain profile. 80 230 IPR008254 GO:0010181
Vvi18g522 688 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 529 688 IPR039261 -
Vvi18g522 688 Gene3D - 332 464 IPR023173 GO:0016491
Vvi18g522 688 Hamap NADPH--cytochrome P450 reductase [POR]. 6 688 IPR023208 GO:0003958
Vvi18g522 688 Gene3D - 532 688 IPR039261 -
Vvi18g522 688 Pfam Oxidoreductase NAD-binding domain 542 652 IPR001433 GO:0016491
Vvi18g522 688 PRINTS Flavodoxin signature 81 94 IPR001094 GO:0010181
Vvi18g522 688 PRINTS Flavodoxin signature 137 148 IPR001094 GO:0010181
Vvi18g522 688 PRINTS Flavodoxin signature 171 181 IPR001094 GO:0010181
Vvi18g522 688 PRINTS Flavodoxin signature 195 214 IPR001094 GO:0010181
Vvi18g522 688 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 322 332 IPR001709 GO:0016491
Vvi18g522 688 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 466 473 IPR001709 GO:0016491
Vvi18g522 688 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 500 509 IPR001709 GO:0016491
Vvi18g522 688 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 541 560 IPR001709 GO:0016491
Vvi18g522 688 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 570 579 IPR001709 GO:0016491
Vvi18g522 688 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 583 594 IPR001709 GO:0016491
Vvi18g522 688 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 614 630 IPR001709 GO:0016491
Vvi18g522 688 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 637 645 IPR001709 GO:0016491
Vvi18g522 688 SUPERFAMILY Flavoproteins 76 237 IPR029039 -
Vvi18g522 688 PANTHER NITRIC OXIDE SYNTHASE-RELATED 9 688 - -
Vvi18g522 688 PANTHER NADPH--CYTOCHROME P450 REDUCTASE 9 688 - -
Vvi18g522 688 Pfam Flavodoxin 82 225 IPR008254 GO:0010181
Vvi18g522 688 SUPERFAMILY Riboflavin synthase domain-like 279 530 IPR017938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g522 K00327 POR; NADPH-ferrihemoprotein reductase [EC:1.6.2.4] - vvi:100256291 1324.69
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g522 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1294 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001035 5 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 2 3 2 2 4 3 2 81