Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g526 ATGTCCAGCAATGATGGTTTCGCAGGTGTTTCAAATTGCTATGTATTCAAAAGCCGATTACAAGAGTATGCACAAAAAGTGGGACTTCCGACGCCTTTATACGATACCATCAAGGAAGGTCCTCCCCATGTGCCTTCCTTTAAGTCCACAGTGATAGTGAATGATGTCAGGTATGATTCTCTACCTGGATTTTCCAATCGCAAGGCAGCAGAGCAGTCAGCTGCTGAAGTTGCTCTTGTGGAATTAGCTAAATCTGGGAACATGAAGGAATGCATTTCTCAACCTGTGCATGAAACAGGCTTATGCAAAAACCTGCTCCAAGAATATGCACAGAAGATGAACTATGCAATTCCAATGTATGTATGCCAGAAAGATGAGTCACCGGGTAGAGCAGCCTCTTTTTCTTGTACAGTTGAGATTGGGGGGATTCGTTATATTGGAGCTGCAGCAAGAACAAAGAAAGAAGCAGAGATCAAAGCTGCTAGAACTGCTCTCTTAGCAATCCGGGCAAATACAGATGGAGTTGGTGAGAAATCAATTGGCAACACTCAGTTGACAGTAATACCAGGCAAAAAGAAGGGACCAGAGTCGGGTAATCCTGATGAGCCTGCAAAAGCTCTCAAACCAAAGAAAGCTCGTTTCAAAACCAAGGGGCTTAGGAAGAAATTCCCTGGAAACAAGGTAGGCAATGATCAAGTTGAAGATACAAGGGGTATGGAGGTTGATATAGATAATCAGGTGGGATCAGAACTGCTTCAGACCGATGCATCTATGGTCCAAGTAGCTGAATCTGGACTGTTGTCCATGGAATCAAAGGAGAATTTTGAAGAGGAGAAATCAATTGTAAACCAAAATGGGGGGGACAAAACTGTTGCTGAAGGTGACCCGATTCCTGATATCATTGGTAATTGTCAAAATGGGCAAGCAACAGCTTCAGACATAAAAAAAACCGACCATAAAGCACCTCCTGAGCTGGGAATCTCTTCCATGTCCCCTGCAGAAGTTTTAGTCAGTGTGGCCATGGAGGTGAACAACGTTTCTGAAGCTGGACTGGTGGATTCAGCAATAATGAACAGTTCCAACGAGGATCAGACAGAGGCTGCAAGTGCCGCAAAGGATTTCAAGCAAATGGGTGCAAATGAAGACGATTTCAAGAGCAACGGAGCAAGCGCCCTGGGCATTGTGGCCTCAAATCTAGGAGACACTTTGAGTTTATTTCTATTTGAGCTCTCGCCTTCTTACCTCTAG 1248 44.39 MSSNDGFAGVSNCYVFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALVELAKSGNMKECISQPVHETGLCKNLLQEYAQKMNYAIPMYVCQKDESPGRAASFSCTVEIGGIRYIGAAARTKKEAEIKAARTALLAIRANTDGVGEKSIGNTQLTVIPGKKKGPESGNPDEPAKALKPKKARFKTKGLRKKFPGNKVGNDQVEDTRGMEVDIDNQVGSELLQTDASMVQVAESGLLSMESKENFEEEKSIVNQNGGDKTVAEGDPIPDIIGNCQNGQATASDIKKTDHKAPPELGISSMSPAEVLVSVAMEVNNVSEAGLVDSAIMNSSNEDQTEAASAAKDFKQMGANEDDFKSNGASALGIVASNLGDTLSLFLFELSPSYL* 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5920511 5929041 + Vvi18g526 Vvi18g526 780229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g526 415 Gene3D - 98 169 - -
Vvi18g526 415 SUPERFAMILY dsRNA-binding domain-like 16 84 - -
Vvi18g526 415 CDD DSRM_AtDRB-like_rpt1 15 83 IPR044450 GO:0003725
Vvi18g526 415 Pfam Double-stranded RNA binding motif 103 166 IPR014720 -
Vvi18g526 415 Pfam Double-stranded RNA binding motif 17 79 IPR014720 -
Vvi18g526 415 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 1 1 315 IPR031147 GO:0003725
Vvi18g526 415 MobiDBLite consensus disorder prediction 195 209 - -
Vvi18g526 415 PANTHER RIBONUCLEASE III 1 315 IPR011907 GO:0003723|GO:0004525|GO:0006364
Vvi18g526 415 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 101 170 IPR014720 -
Vvi18g526 415 SMART DRBM_3 102 169 IPR014720 -
Vvi18g526 415 SMART DRBM_3 16 83 IPR014720 -
Vvi18g526 415 MobiDBLite consensus disorder prediction 186 209 - -
Vvi18g526 415 Gene3D - 16 97 - -
Vvi18g526 415 SUPERFAMILY dsRNA-binding domain-like 103 169 - -
Vvi18g526 415 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 15 84 IPR014720 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g526 - - - vvi:100243781 786.949
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g526 . . Bda01g00907 . . . . . . . . . . . . . . . . . . . . . Cla08g01158 Cam08g1618 Cec08g1193 Cco08g1316 Clacu08g1317 . Cre08g1102 Cone4ag1293 Cone7ag0862 . . . . . Cme03g01812 . . . . Bpe02g01145 . . . . . . . Cma05g00538 Car05g00485 . Cpe11g00474 . . . . . . . . . . . . . . . . . Chy03g01315 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012839 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 0 1 1 1 1 0 1 1 1 1 27