Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g527 ATGCACGGACGACCTCGCAAAGCCCCGAAACCCGAAGACGCAGCAGCTTCAGCGGCCAAAGCTGAAAAGCTACGCGCTCTTCAATCTCAGCTCCTTCACAATCATCACAATCAGATATATACGAAGGAAGCCCTAGAGATCTCCGCCAAGCTACTTGAAGCCAATCCCGAATCATACACAGCTTGGAATTATAGGAAGCTCGCTGTTGAACATAATCTGAGTCACTCCGAGTCTGATCCGGATACAGTCAAATCAATTTTCAGCGAGGAACTTAGAGTCGTAGAGAACTCATTGAAGCAGAATTTTAAGTCTTATGGAGCGTGGCACCATCGTAAATGGGTTCTGAGCAAGGGACATTCATCAGTAGATCATGAATTGCAGCTACTGGATCGGTTTCAGAGGGCTGATTCTCGGAATTTCCATGCCTGGAATTATCGTCGATTTATTGCGGCCTTGAAGGGCATACCTGATGAGGAGGAGTTGAAGTATACAACCAAATTAATAGAGACAAATTTCAGCAATTATTCTGCATGGCACAATCGTAGTGTACTTTTGTCCCATTTGCTGCAAAACAAGGTCAAAGGGTTTTTCCCAAAGGAAAAGGTTTTGGTAGAAGAGTATGAATTTGTACATCAAGCTCTTTTCACTGATCCAGATGATCAAAGTGGTTGGTTTTATCATCTTTGGCTTCTTGATCAAACTGTTAAACCAGAAACTCCTCTGCTGGTTTCTACTTGGCCTGCTCATGGTTCTGATATCATTGAACATTTCCTCTCATTCTTTACTTCAATGAAGCTGTTGAAGGTGTAA 810 43.09 MHGRPRKAPKPEDAAASAAKAEKLRALQSQLLHNHHNQIYTKEALEISAKLLEANPESYTAWNYRKLAVEHNLSHSESDPDTVKSIFSEELRVVENSLKQNFKSYGAWHHRKWVLSKGHSSVDHELQLLDRFQRADSRNFHAWNYRRFIAALKGIPDEEELKYTTKLIETNFSNYSAWHNRSVLLSHLLQNKVKGFFPKEKVLVEEYEFVHQALFTDPDDQSGWFYHLWLLDQTVKPETPLLVSTWPAHGSDIIEHFLSFFTSMKLLKV* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5930196 5932891 + Vvi18g527 Vvi18g527 780230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g527 269 Gene3D Protein prenylyltransferase 1 258 - -
Vvi18g527 269 MobiDBLite consensus disorder prediction 1 19 - -
Vvi18g527 269 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 1 256 - -
Vvi18g527 269 MobiDBLite consensus disorder prediction 1 20 - -
Vvi18g527 269 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 40 74 IPR002088 GO:0008318|GO:0018342
Vvi18g527 269 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 86 120 IPR002088 GO:0008318|GO:0018342
Vvi18g527 269 PANTHER - 1 256 - -
Vvi18g527 269 Pfam Protein prenyltransferase alpha subunit repeat 88 117 IPR002088 GO:0008318|GO:0018342
Vvi18g527 269 Pfam Protein prenyltransferase alpha subunit repeat 123 149 IPR002088 GO:0008318|GO:0018342
Vvi18g527 269 Pfam Protein prenyltransferase alpha subunit repeat 204 233 IPR002088 GO:0008318|GO:0018342
Vvi18g527 269 Pfam Protein prenyltransferase alpha subunit repeat 42 71 IPR002088 GO:0008318|GO:0018342
Vvi18g527 269 Pfam Protein prenyltransferase alpha subunit repeat 158 188 IPR002088 GO:0008318|GO:0018342
Vvi18g527 269 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 156 190 IPR002088 GO:0008318|GO:0018342
Vvi18g527 269 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 202 236 IPR002088 GO:0008318|GO:0018342
Vvi18g527 269 SUPERFAMILY Protein prenylyltransferase 4 240 - -
Vvi18g527 269 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 121 155 IPR002088 GO:0008318|GO:0018342
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g527 K14050 RABGGTA; geranylgeranyl transferase type-2 subunit alpha [EC:2.5.1.60] - vvi:100248920 504.212
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g527 . Blo12g00733 . . . . . . . . Cma01g01475 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01530 . . . . . . . . . . . . . . Cla11g01428 Cam11g1484 Cec11g1516 Cco11g1511 Clacu11g1647 Cmu11g1464 Cre11g1882 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005438 1 5 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 2 37