Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g528 ATGATTTTGTGGAGAGATGTAAATTTTCATTTTTATGATGCACATGTCCAAGAATCAAGCCCAATTGCTTATTTTGATCGACTAAGCATTAAAAAGGACCATGAGCCAGCAGCTTCTAAGTGGCATGCAAAGACTCTAGTTAATGAGATAGCCCTTGTTCGGCAACTGTTGTCAGAGATAGACTGTAAAATTGGAAAGCTTACTCTTGCAAGACTGCTGATGGCTCATGATGCAATGGTGTCATACATGGCTCCACATTCTCACAAGAAGGTCCATTCTGAAGAAGTTCTACAACTATATAGTGACCTAATGGAGTTGGACCCAATGCATTCCCAATACTATAAGGAGGCACAAAGCTTAGTCTTATTGCAGCAGGTGACATCCAATAGGGAATCCTTGCTGAAACACTGCTGCCACCATAGGGTCTCGACCTCTTCAAGTGTTGGTAATTCTGTCTGTTTACGACTAAATAATTTGTCTTTATCAAGGATCGGATGTGTTGAGCAATTATTGTGGGTCCAAATGCTTGACCTCAGCCACAATGAACTTCGATCAATTGATGGATTGGAGGCTATGCAGCTTCTCTCTTTCCTGAACCTGAGTCATAATAAGCTTAGCAGTTTTACTGCTTTGGAGCCTTTGAGACTGCTGAAGTTATTAAAGGTGTTGGACATCTCATACAATGAGATAGGTGCCCACCCCGTTGACACAAGAAGGTATTTGTGCTCTTCTCCTTTGTCTCATACGGTAGGAAGTGATTGGAATTTCAATGAATTTGTACCTGACGATGCCAAAGTGACAAACTACTGGGAGGCTTTTGCGATTTTTAGAGGCTTCAATTTGACGCAATTGGATATTGTGGGGAATGCAATCACTGATGAAAAATTCAAGTCATTTCTGATTAAGGTTCTCCCTACACTAAAGTGGGTAGACGGTGAAGAATTGCATTAA 951 41.01 MILWRDVNFHFYDAHVQESSPIAYFDRLSIKKDHEPAASKWHAKTLVNEIALVRQLLSEIDCKIGKLTLARLLMAHDAMVSYMAPHSHKKVHSEEVLQLYSDLMELDPMHSQYYKEAQSLVLLQQVTSNRESLLKHCCHHRVSTSSSVGNSVCLRLNNLSLSRIGCVEQLLWVQMLDLSHNELRSIDGLEAMQLLSFLNLSHNKLSSFTALEPLRLLKLLKVLDISYNEIGAHPVDTRRYLCSSPLSHTVGSDWNFNEFVPDDAKVTNYWEAFAIFRGFNLTQLDIVGNAITDEKFKSFLIKVLPTLKWVDGEELH* 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5932951 5935352 + Vvi18g528 Vvi18g528 780231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g528 316 Gene3D Protein prenylyltransferase 11 130 - -
Vvi18g528 316 Pfam Leucine Rich repeat 280 294 IPR001611 GO:0005515
Vvi18g528 316 Pfam Leucine Rich repeat 220 231 IPR001611 GO:0005515
Vvi18g528 316 SUPERFAMILY L domain-like 123 232 - -
Vvi18g528 316 PANTHER - 4 229 - -
Vvi18g528 316 Gene3D Ribonuclease Inhibitor 131 316 IPR032675 -
Vvi18g528 316 ProSiteProfiles Leucine-rich repeat profile. 194 215 IPR001611 GO:0005515
Vvi18g528 316 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 4 229 - -
Vvi18g528 316 SUPERFAMILY Protein prenylyltransferase 55 115 - -
Vvi18g528 316 Pfam Leucine Rich repeats (2 copies) 174 212 IPR025875 -
Vvi18g528 316 ProSiteProfiles Leucine-rich repeat profile. 172 193 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g528 K14050 RABGGTA; geranylgeranyl transferase type-2 subunit alpha [EC:2.5.1.60] - vvi:100248920 624.78
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0863 . . Lsi04g02283 . . . . . . . . . . . . . . . . . . . Cpe02g00478 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005438 1 5 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 2 37