Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g529 | ATGCCTCACAGAACCACTTACTTCTTCCCCAGGCAGTTTCCCGACCGCAGATTCGATGCATCTTCCAAGGAGCTGCTGGCTCACGAGAAGAAGATTGGAGGCGAAAGTAACAGAAAAGGTACGAGAACAACCAAGGATGTGACTGCTGATAGGACTTACAATGCTTCTGATCTATTCACGGGAAGCGATAAGTTTCGGAGCAAGAAGCAACTCGCCGCTTTTTGTGACTGGTTGGTGGAGAAAAAGGGTGACAGATCGGGTCACGTGAGGTTGAGGTCGCGGAACGATGAAGGTGATCGCGACGTGTTGTTGCCTCCACCGCCAGCGCCGGTGCCGGAGGTGGTGGCAGGAAAGGACCAGCAGTTTGATCGGCAGGTGTCGTTGCCGAGGGTGTCGAGCGGTAGTAGCTATGCTGGGAGCCTGTTCTCTGGAACGACGGTGGAAGGGAACGTGTCGAGCGGTCTGAAGGATTCGCATACGAATTCGCATTCGCAGGAGTCGACGAGGCGAGAGGTGGATGAGGAGAAGGAGAGTGCGGCGCAGAAGTCAAGGGAGAGCTACTATTTGCAGCTCACGCTTGCTAAAAGACTCGCTTCTCAAGCGTCGTTGGCTTGTGAGCCTGTGCTCTTTTTACAAGAGAGTGGAGCGGAGGGAAATGCCGTCTCCTTCGATCCCGACGTTGTTTCCTATCGTCTTTGGGTTAGTGGGTGCTTGTCATATACTGACAAAATATCAGACGGGTTCTATAACATTCTGGGAATGAATCCGTATGTGTGGGTGATGTGCAATGAATTGGAGGAAGGTAGAAGGCTGCCACCTTTAATGGCGCTTAAAGCCGTAGAACCCAATGATACATCCATGGAGGTGGTTCTTGTTGATAGACGTGGAGACTCGCGCCTCAAGGAGCTTGAAGATAAAGCACATCAATTATACTGCGCTTCAGAGAATACCTTGGTGTTGGTGGAGCAACTTGGCAAGCTGGTTGCAATCTATATGGGGGGTAGTTTTCCGGTGGAGCAAGGTGATCTCCATAAGCAATGGAAATTGGTTAGCAAGAGATTGAGAGATTTTCAGAAGTGTATTGTGCTACCGATCGGCAGCCTATCAATGGGGCTCTGTAGGCATAGAGCAATTCTTTTCAAGAAATTGGCGGACTACATAGGTTTGCCTTGCCGGATAGCTCGAGGTTGCAAGTATTGTGTTGCCGATCATCGCTCTTCATGTCTTGTGAAAATTGATGACAAGCAGTCCTCAAGGGAATATGTAGTTGACCTAGTTGGGGAACCAGGAAATGTCCATGGTCCAGATTCCTCAATCACTGGAGGTTTACTTTCATCAATGCCTTCACCACTTCAAATTTCTCATCTTAAAGAATATCAACAGCCTTACATGGATAATGAATCATGTTGTCAAATTCAAAACTCAAAGAACACATGTATTTATCCCGAAGATCCTCTATATTTAGGCAATGAGAAAAACACCTTGTACACTCCAACTGATCAAATTTGTGAAAGAATGGAATCATCTGTGTTGCCTTTGGAGTTCAATGGGAACACTGATCGGTGCATAATTCAAAGTGCAATGTTGCAATCTGTCCAAAGCAATGTTTCTGAAGCTGTGGATGCTTCTGCTTCTGGGGTGTCTATACATGAATGTTTTAGAATTGCTGGAGAAAAGATTGTTATACAACAAGCTCACAAAAAAGAGATTGCTCTATCTGGAAGTCCGATTACGAGTAAGGCTCTCAAGCAGCCTAAAGTAAGCTTGTCTAGTAAATCAAATATCAAGGAGGTTGAAGGCAGACTTGAGAATCGAGGTAGATTCCATACTGTAACCATTCCAAGATACTTGAATCTTGAACCTTCTCTTGCAATGGACTGGCTAGAGATTTCATGGGATGAATTACATATCAAAGAGCGTGTTGGTGCTGGTTCATTTGGAACAGTGCATCGTGCTGAATGGCATGGATCGGATGTTGCTGTTAAAGTTCTAACTGTCCAGAATTTTCAGGATGATCAGTTGAAGGAGTTCCTAAGAGAGGTTGCAATAATGAAACGGGTCCGCCATCCGAATGTGGTACTCTTCATGGGTGCAGTAACAAAGCGTCCACATCTTTCAATTGTGACTGAATATCTGCCTAGGGGTAGTTTATATCGTCTAATTCATAGACCAACTTCAGCGGAAATTTTGGATCAAAGGAGGAGATTACGAATGGCCTTGGATGTGGCCAAGGGAATCAATTATCTACATTGCCTTAAACCTCCTATAGTTCATTGGGATCTTAAATCTCCCAATCTATTGGTGGATAAAAATTGGACAGTGAAGGTATGTGATTTTGGGTTATCCAGGTTCAAGGCAAACACTTTTCTCTCATCAAAATCTGTTGCTGGGACACCTGAGTGGATGGCCCCCGAGTTCCTACGTGGAGAGCCTTCAAATGAGAAGTCTGATGTTTACAGTTTCGGAGTGATCTTATGGGAGCTTGTGACCATGCAACAGCCATGGAATGGACTTAGCCCTGCCCAGGTGGTTGGAGCTGTGGCTTTCCAAAACAGAAGGCTTTCTATCCCACAGAATACCTCTCCAGTGTTGGCTTCTCTTATGGAATCTTGTTGGGCTGATGACCCTGCTCAGCGCCCCTCTTTCTCTAGTATAGTAGAGACACTGAAGAAGCTGCTAAAGTCTCCACTGCAGTTAATACAGATGGGGGGTACATAA | 2718 | 45.92 | MPHRTTYFFPRQFPDRRFDASSKELLAHEKKIGGESNRKGTRTTKDVTADRTYNASDLFTGSDKFRSKKQLAAFCDWLVEKKGDRSGHVRLRSRNDEGDRDVLLPPPPAPVPEVVAGKDQQFDRQVSLPRVSSGSSYAGSLFSGTTVEGNVSSGLKDSHTNSHSQESTRREVDEEKESAAQKSRESYYLQLTLAKRLASQASLACEPVLFLQESGAEGNAVSFDPDVVSYRLWVSGCLSYTDKISDGFYNILGMNPYVWVMCNELEEGRRLPPLMALKAVEPNDTSMEVVLVDRRGDSRLKELEDKAHQLYCASENTLVLVEQLGKLVAIYMGGSFPVEQGDLHKQWKLVSKRLRDFQKCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIDDKQSSREYVVDLVGEPGNVHGPDSSITGGLLSSMPSPLQISHLKEYQQPYMDNESCCQIQNSKNTCIYPEDPLYLGNEKNTLYTPTDQICERMESSVLPLEFNGNTDRCIIQSAMLQSVQSNVSEAVDASASGVSIHECFRIAGEKIVIQQAHKKEIALSGSPITSKALKQPKVSLSSKSNIKEVEGRLENRGRFHTVTIPRYLNLEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQNFQDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPTSAEILDQRRRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFLSSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWNGLSPAQVVGAVAFQNRRLSIPQNTSPVLASLMESCWADDPAQRPSFSSIVETLKKLLKSPLQLIQMGGT* | 906 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 5939860 | 5949524 | - | Vvi18g529 | Vvi18g529 | 780232 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g529 | 905 | PRINTS | Tyrosine kinase catalytic domain signature | 709 | 722 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi18g529 | 905 | PRINTS | Tyrosine kinase catalytic domain signature | 750 | 768 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi18g529 | 905 | PRINTS | Tyrosine kinase catalytic domain signature | 816 | 838 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi18g529 | 905 | PRINTS | Tyrosine kinase catalytic domain signature | 860 | 882 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi18g529 | 905 | Pfam | Protein tyrosine and serine/threonine kinase | 635 | 889 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi18g529 | 905 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 153 | 903 | - | - | |
Vvi18g529 | 905 | CDD | STKc_MAP3K-like | 641 | 889 | - | - | |
Vvi18g529 | 905 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 756 | 768 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi18g529 | 905 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 226 | 432 | - | - | |
Vvi18g529 | 905 | ProSitePatterns | Protein kinases ATP-binding region signature. | 641 | 662 | IPR017441 | GO:0005524 | |
Vvi18g529 | 905 | SUPERFAMILY | Protein kinase-like (PK-like) | 610 | 889 | IPR011009 | - | |
Vvi18g529 | 905 | Gene3D | Transferase(Phosphotransferase) domain 1 | 714 | 899 | - | - | |
Vvi18g529 | 905 | Gene3D | Phosphorylase Kinase; domain 1 | 628 | 712 | - | - | |
Vvi18g529 | 905 | MobiDBLite | consensus disorder prediction | 162 | 179 | - | - | |
Vvi18g529 | 905 | ProSiteProfiles | Protein kinase domain profile. | 635 | 893 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi18g529 | 905 | MobiDBLite | consensus disorder prediction | 89 | 113 | - | - | |
Vvi18g529 | 905 | PANTHER | SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 | 153 | 903 | - | - | |
Vvi18g529 | 905 | SMART | serkin_6 | 635 | 893 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi18g529 | 905 | MobiDBLite | consensus disorder prediction | 150 | 179 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76376 | PF07714 | PK_Tyr_Ser-Thr | 4.50E-67 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g529 | - | - | vvi:100254015 | 1799.25 |