Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g529 ATGCCTCACAGAACCACTTACTTCTTCCCCAGGCAGTTTCCCGACCGCAGATTCGATGCATCTTCCAAGGAGCTGCTGGCTCACGAGAAGAAGATTGGAGGCGAAAGTAACAGAAAAGGTACGAGAACAACCAAGGATGTGACTGCTGATAGGACTTACAATGCTTCTGATCTATTCACGGGAAGCGATAAGTTTCGGAGCAAGAAGCAACTCGCCGCTTTTTGTGACTGGTTGGTGGAGAAAAAGGGTGACAGATCGGGTCACGTGAGGTTGAGGTCGCGGAACGATGAAGGTGATCGCGACGTGTTGTTGCCTCCACCGCCAGCGCCGGTGCCGGAGGTGGTGGCAGGAAAGGACCAGCAGTTTGATCGGCAGGTGTCGTTGCCGAGGGTGTCGAGCGGTAGTAGCTATGCTGGGAGCCTGTTCTCTGGAACGACGGTGGAAGGGAACGTGTCGAGCGGTCTGAAGGATTCGCATACGAATTCGCATTCGCAGGAGTCGACGAGGCGAGAGGTGGATGAGGAGAAGGAGAGTGCGGCGCAGAAGTCAAGGGAGAGCTACTATTTGCAGCTCACGCTTGCTAAAAGACTCGCTTCTCAAGCGTCGTTGGCTTGTGAGCCTGTGCTCTTTTTACAAGAGAGTGGAGCGGAGGGAAATGCCGTCTCCTTCGATCCCGACGTTGTTTCCTATCGTCTTTGGGTTAGTGGGTGCTTGTCATATACTGACAAAATATCAGACGGGTTCTATAACATTCTGGGAATGAATCCGTATGTGTGGGTGATGTGCAATGAATTGGAGGAAGGTAGAAGGCTGCCACCTTTAATGGCGCTTAAAGCCGTAGAACCCAATGATACATCCATGGAGGTGGTTCTTGTTGATAGACGTGGAGACTCGCGCCTCAAGGAGCTTGAAGATAAAGCACATCAATTATACTGCGCTTCAGAGAATACCTTGGTGTTGGTGGAGCAACTTGGCAAGCTGGTTGCAATCTATATGGGGGGTAGTTTTCCGGTGGAGCAAGGTGATCTCCATAAGCAATGGAAATTGGTTAGCAAGAGATTGAGAGATTTTCAGAAGTGTATTGTGCTACCGATCGGCAGCCTATCAATGGGGCTCTGTAGGCATAGAGCAATTCTTTTCAAGAAATTGGCGGACTACATAGGTTTGCCTTGCCGGATAGCTCGAGGTTGCAAGTATTGTGTTGCCGATCATCGCTCTTCATGTCTTGTGAAAATTGATGACAAGCAGTCCTCAAGGGAATATGTAGTTGACCTAGTTGGGGAACCAGGAAATGTCCATGGTCCAGATTCCTCAATCACTGGAGGTTTACTTTCATCAATGCCTTCACCACTTCAAATTTCTCATCTTAAAGAATATCAACAGCCTTACATGGATAATGAATCATGTTGTCAAATTCAAAACTCAAAGAACACATGTATTTATCCCGAAGATCCTCTATATTTAGGCAATGAGAAAAACACCTTGTACACTCCAACTGATCAAATTTGTGAAAGAATGGAATCATCTGTGTTGCCTTTGGAGTTCAATGGGAACACTGATCGGTGCATAATTCAAAGTGCAATGTTGCAATCTGTCCAAAGCAATGTTTCTGAAGCTGTGGATGCTTCTGCTTCTGGGGTGTCTATACATGAATGTTTTAGAATTGCTGGAGAAAAGATTGTTATACAACAAGCTCACAAAAAAGAGATTGCTCTATCTGGAAGTCCGATTACGAGTAAGGCTCTCAAGCAGCCTAAAGTAAGCTTGTCTAGTAAATCAAATATCAAGGAGGTTGAAGGCAGACTTGAGAATCGAGGTAGATTCCATACTGTAACCATTCCAAGATACTTGAATCTTGAACCTTCTCTTGCAATGGACTGGCTAGAGATTTCATGGGATGAATTACATATCAAAGAGCGTGTTGGTGCTGGTTCATTTGGAACAGTGCATCGTGCTGAATGGCATGGATCGGATGTTGCTGTTAAAGTTCTAACTGTCCAGAATTTTCAGGATGATCAGTTGAAGGAGTTCCTAAGAGAGGTTGCAATAATGAAACGGGTCCGCCATCCGAATGTGGTACTCTTCATGGGTGCAGTAACAAAGCGTCCACATCTTTCAATTGTGACTGAATATCTGCCTAGGGGTAGTTTATATCGTCTAATTCATAGACCAACTTCAGCGGAAATTTTGGATCAAAGGAGGAGATTACGAATGGCCTTGGATGTGGCCAAGGGAATCAATTATCTACATTGCCTTAAACCTCCTATAGTTCATTGGGATCTTAAATCTCCCAATCTATTGGTGGATAAAAATTGGACAGTGAAGGTATGTGATTTTGGGTTATCCAGGTTCAAGGCAAACACTTTTCTCTCATCAAAATCTGTTGCTGGGACACCTGAGTGGATGGCCCCCGAGTTCCTACGTGGAGAGCCTTCAAATGAGAAGTCTGATGTTTACAGTTTCGGAGTGATCTTATGGGAGCTTGTGACCATGCAACAGCCATGGAATGGACTTAGCCCTGCCCAGGTGGTTGGAGCTGTGGCTTTCCAAAACAGAAGGCTTTCTATCCCACAGAATACCTCTCCAGTGTTGGCTTCTCTTATGGAATCTTGTTGGGCTGATGACCCTGCTCAGCGCCCCTCTTTCTCTAGTATAGTAGAGACACTGAAGAAGCTGCTAAAGTCTCCACTGCAGTTAATACAGATGGGGGGTACATAA 2718 45.92 MPHRTTYFFPRQFPDRRFDASSKELLAHEKKIGGESNRKGTRTTKDVTADRTYNASDLFTGSDKFRSKKQLAAFCDWLVEKKGDRSGHVRLRSRNDEGDRDVLLPPPPAPVPEVVAGKDQQFDRQVSLPRVSSGSSYAGSLFSGTTVEGNVSSGLKDSHTNSHSQESTRREVDEEKESAAQKSRESYYLQLTLAKRLASQASLACEPVLFLQESGAEGNAVSFDPDVVSYRLWVSGCLSYTDKISDGFYNILGMNPYVWVMCNELEEGRRLPPLMALKAVEPNDTSMEVVLVDRRGDSRLKELEDKAHQLYCASENTLVLVEQLGKLVAIYMGGSFPVEQGDLHKQWKLVSKRLRDFQKCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIDDKQSSREYVVDLVGEPGNVHGPDSSITGGLLSSMPSPLQISHLKEYQQPYMDNESCCQIQNSKNTCIYPEDPLYLGNEKNTLYTPTDQICERMESSVLPLEFNGNTDRCIIQSAMLQSVQSNVSEAVDASASGVSIHECFRIAGEKIVIQQAHKKEIALSGSPITSKALKQPKVSLSSKSNIKEVEGRLENRGRFHTVTIPRYLNLEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQNFQDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPTSAEILDQRRRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFLSSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWNGLSPAQVVGAVAFQNRRLSIPQNTSPVLASLMESCWADDPAQRPSFSSIVETLKKLLKSPLQLIQMGGT* 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5939860 5949524 - Vvi18g529 Vvi18g529 780232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g529 905 PRINTS Tyrosine kinase catalytic domain signature 709 722 IPR001245 GO:0004672|GO:0006468
Vvi18g529 905 PRINTS Tyrosine kinase catalytic domain signature 750 768 IPR001245 GO:0004672|GO:0006468
Vvi18g529 905 PRINTS Tyrosine kinase catalytic domain signature 816 838 IPR001245 GO:0004672|GO:0006468
Vvi18g529 905 PRINTS Tyrosine kinase catalytic domain signature 860 882 IPR001245 GO:0004672|GO:0006468
Vvi18g529 905 Pfam Protein tyrosine and serine/threonine kinase 635 889 IPR001245 GO:0004672|GO:0006468
Vvi18g529 905 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 153 903 - -
Vvi18g529 905 CDD STKc_MAP3K-like 641 889 - -
Vvi18g529 905 ProSitePatterns Serine/Threonine protein kinases active-site signature. 756 768 IPR008271 GO:0004672|GO:0006468
Vvi18g529 905 Pfam Ethylene-responsive protein kinase Le-CTR1 226 432 - -
Vvi18g529 905 ProSitePatterns Protein kinases ATP-binding region signature. 641 662 IPR017441 GO:0005524
Vvi18g529 905 SUPERFAMILY Protein kinase-like (PK-like) 610 889 IPR011009 -
Vvi18g529 905 Gene3D Transferase(Phosphotransferase) domain 1 714 899 - -
Vvi18g529 905 Gene3D Phosphorylase Kinase; domain 1 628 712 - -
Vvi18g529 905 MobiDBLite consensus disorder prediction 162 179 - -
Vvi18g529 905 ProSiteProfiles Protein kinase domain profile. 635 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g529 905 MobiDBLite consensus disorder prediction 89 113 - -
Vvi18g529 905 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 153 903 - -
Vvi18g529 905 SMART serkin_6 635 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g529 905 MobiDBLite consensus disorder prediction 150 179 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g772 Vvi18g529 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76376 PF07714 PK_Tyr_Ser-Thr 4.50E-67 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g529 - - vvi:100254015 1799.25