Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g531 ATGGAAGTCGCCGGAGACGTACCCTCCGACGCTGTGTACGTCGCCGATGGCTCCGAAGTCGCTCTTCAACCCAGCGACGCTACCAATCAGCTTACGCTCTCCTTCCGCGGCCAAGTTTATGTTTTTGATTCTGTTACGCATGAAAAGGTTCGATCTGTGCTATTACTTTTGGGGACACCAGAACTATCTTCCATTGCACATAATATGGAAATAGTACCTCAAAATCAGAGGGCTTTAACAGACTTCCCTGGACCATACAATCAACCTCATAGAGCAGCTTCTTTAAATAGGTTCCGTCAAAAGAGAAAAGAGCGGTGTTTTGATAAGAAAATTAGATATAATGTCCGCCAAGAAGTTGCACTCAGGATGCAGCGAAACAAGGGTCAATTTTCTTCGTCAAAGAAGTCTGAGGGAACTTTTAGCTGGGATTCTGTCCAGGATTCTGGACAAGATGAGAGCCCTCCTGAAACCTTATGTACACATTGTGGCACCAGTTCAAAGTCCACTCCAATGATGCGACGTGGGCCAACTGGTCCGAGGTCTCTCTGCAATGCATGTGGGCTTTTTTGGGCAAACAGGGGATCTTTGAGGGATCTTTCCAAGAAAAACCAGGATCATTCTCTGAACCAAATTGAGCGGGGTGATGGTGAAGCTAATGATTCTGACTGTGGAACTAGTGGATACATAAATAACAATCATGTTGCTTTCTCAAATAGTGATAACCCGGCTTTAATACCTGAGCAGTAA 747 45.25 MEVAGDVPSDAVYVADGSEVALQPSDATNQLTLSFRGQVYVFDSVTHEKVRSVLLLLGTPELSSIAHNMEIVPQNQRALTDFPGPYNQPHRAASLNRFRQKRKERCFDKKIRYNVRQEVALRMQRNKGQFSSSKKSEGTFSWDSVQDSGQDESPPETLCTHCGTSSKSTPMMRRGPTGPRSLCNACGLFWANRGSLRDLSKKNQDHSLNQIERGDGEANDSDCGTSGYINNNHVAFSNSDNPALIPEQ* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6040225 6058566 + Vvi18g531 Vvi18g531 780234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g531 248 MobiDBLite consensus disorder prediction 125 176 - -
Vvi18g531 248 Pfam CCT motif 91 132 IPR010402 GO:0005515
Vvi18g531 248 ProSitePatterns GATA-type zinc finger domain. 159 186 IPR000679 GO:0006355|GO:0043565
Vvi18g531 248 Pfam tify domain 26 58 IPR010399 -
Vvi18g531 248 CDD ZnF_GATA 159 205 IPR000679 GO:0006355|GO:0043565
Vvi18g531 248 ProSiteProfiles CCT domain profile. 91 133 IPR010402 GO:0005515
Vvi18g531 248 ProSiteProfiles GATA-type zinc finger domain profile. 153 213 IPR000679 GO:0006355|GO:0043565
Vvi18g531 248 PANTHER GATA TRANSCRIPTION FACTOR 28 13 227 IPR045280 GO:0006355
Vvi18g531 248 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 155 204 - -
Vvi18g531 248 MobiDBLite consensus disorder prediction 125 172 - -
Vvi18g531 248 SMART GATA_3 153 206 IPR000679 GO:0006355|GO:0043565
Vvi18g531 248 Gene3D - 150 213 IPR013088 GO:0006355|GO:0008270
Vvi18g531 248 Pfam GATA zinc finger 159 195 IPR000679 GO:0006355|GO:0043565
Vvi18g531 248 ProSiteProfiles Tify domain profile. 24 59 IPR010399 -
Vvi18g531 248 PANTHER GATA TRANSCRIPTION FACTOR 25 13 227 - -
Vvi18g531 248 SMART tify_2 24 59 IPR010399 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14336 PF06203 CCT 9.50E-16 CL0281 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g531 - - vvi:100242037 508.834