Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g531 ATGGAAGTCGCCGGAGACGTACCCTCCGACGCTGTGTACGTCGCCGATGGCTCCGAAGTCGCTCTTCAACCCAGCGACGCTACCAATCAGCTTACGCTCTCCTTCCGCGGCCAAGTTTATGTTTTTGATTCTGTTACGCATGAAAAGGTTCGATCTGTGCTATTACTTTTGGGGACACCAGAACTATCTTCCATTGCACATAATATGGAAATAGTACCTCAAAATCAGAGGGCTTTAACAGACTTCCCTGGACCATACAATCAACCTCATAGAGCAGCTTCTTTAAATAGGTTCCGTCAAAAGAGAAAAGAGCGGTGTTTTGATAAGAAAATTAGATATAATGTCCGCCAAGAAGTTGCACTCAGGATGCAGCGAAACAAGGGTCAATTTTCTTCGTCAAAGAAGTCTGAGGGAACTTTTAGCTGGGATTCTGTCCAGGATTCTGGACAAGATGAGAGCCCTCCTGAAACCTTATGTACACATTGTGGCACCAGTTCAAAGTCCACTCCAATGATGCGACGTGGGCCAACTGGTCCGAGGTCTCTCTGCAATGCATGTGGGCTTTTTTGGGCAAACAGGGGATCTTTGAGGGATCTTTCCAAGAAAAACCAGGATCATTCTCTGAACCAAATTGAGCGGGGTGATGGTGAAGCTAATGATTCTGACTGTGGAACTAGTGGATACATAAATAACAATCATGTTGCTTTCTCAAATAGTGATAACCCGGCTTTAATACCTGAGCAGTAA 747 45.25 MEVAGDVPSDAVYVADGSEVALQPSDATNQLTLSFRGQVYVFDSVTHEKVRSVLLLLGTPELSSIAHNMEIVPQNQRALTDFPGPYNQPHRAASLNRFRQKRKERCFDKKIRYNVRQEVALRMQRNKGQFSSSKKSEGTFSWDSVQDSGQDESPPETLCTHCGTSSKSTPMMRRGPTGPRSLCNACGLFWANRGSLRDLSKKNQDHSLNQIERGDGEANDSDCGTSGYINNNHVAFSNSDNPALIPEQ* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6040225 6058566 + Vvi18g531 Vvi18g531 780234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g531 248 MobiDBLite consensus disorder prediction 125 176 - -
Vvi18g531 248 Pfam CCT motif 91 132 IPR010402 GO:0005515
Vvi18g531 248 ProSitePatterns GATA-type zinc finger domain. 159 186 IPR000679 GO:0006355|GO:0043565
Vvi18g531 248 Pfam tify domain 26 58 IPR010399 -
Vvi18g531 248 CDD ZnF_GATA 159 205 IPR000679 GO:0006355|GO:0043565
Vvi18g531 248 ProSiteProfiles CCT domain profile. 91 133 IPR010402 GO:0005515
Vvi18g531 248 ProSiteProfiles GATA-type zinc finger domain profile. 153 213 IPR000679 GO:0006355|GO:0043565
Vvi18g531 248 PANTHER GATA TRANSCRIPTION FACTOR 28 13 227 IPR045280 GO:0006355
Vvi18g531 248 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 155 204 - -
Vvi18g531 248 MobiDBLite consensus disorder prediction 125 172 - -
Vvi18g531 248 SMART GATA_3 153 206 IPR000679 GO:0006355|GO:0043565
Vvi18g531 248 Gene3D - 150 213 IPR013088 GO:0006355|GO:0008270
Vvi18g531 248 Pfam GATA zinc finger 159 195 IPR000679 GO:0006355|GO:0043565
Vvi18g531 248 ProSiteProfiles Tify domain profile. 24 59 IPR010399 -
Vvi18g531 248 PANTHER GATA TRANSCRIPTION FACTOR 25 13 227 - -
Vvi18g531 248 SMART tify_2 24 59 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g531 - - - vvi:100242037 508.834
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g531 . . . Bda03g00450 Bpe02g00145 . . . Cmo05g00561 . . . . Car12g00188 . . . Bhi04g01395 Tan02g2468 . . Hepe10g0439 . . . . . . . . . . . . . . . . . . . Bda11g00806 . . . . Bma02g00116 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01015 Csa02g02198 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi9g1014 . 1 164 Tify Gene Family AT3G21175 64.3 5.7e-48 188.0
Vvi3randomg10 . 33 166 Tify Gene Family AT3G21175 65.0 2.0e-37 152.9
Vvi18g531 . 7 208 Tify Gene Family AT4G24470 57.2 3.0e-58 222.6
Vvi3randomg10 . 33 224 Tify Gene Family AT4G24470 54.5 1.7e-48 190.3
Vvi9g1014 . 27 211 Tify Gene Family AT4G24470 55.3 2.3e-45 179.9
Vvi9g1014 . 1 241 Tify Gene Family AT1G51600 64.1 5.6e-78 288.1
Vvi3randomg10 . 33 211 Tify Gene Family AT1G51600 63.8 3.0e-55 212.6
Vvi18g532 . 14 216 Tify Gene Family AT1G51600 53.5 1.4e-49 193.7
Vvi18g531 . 3 209 Tify Gene Family AT1G51600 52.5 1.3e-47 187.2
Vvi18g531 . 7 208 Tify Gene Family AT4G24470 57.2 3.0e-58 222.6
Vvi3randomg10 . 33 224 Tify Gene Family AT4G24470 54.5 1.7e-48 190.3
Vvi9g1014 . 27 211 Tify Gene Family AT4G24470 55.3 2.3e-45 179.9
Vvi9g1014 . 1 241 Tify Gene Family AT1G51600 64.1 5.6e-78 288.1
Vvi3randomg10 . 33 211 Tify Gene Family AT1G51600 63.8 3.0e-55 212.6
Vvi18g532 . 14 216 Tify Gene Family AT1G51600 53.5 1.4e-49 193.7
Vvi18g531 . 3 209 Tify Gene Family AT1G51600 52.5 1.3e-47 187.2
Vvi9g1014 . 1 164 Tify Gene Family AT3G21175 64.3 5.7e-48 188.0
Vvi3randomg10 . 33 166 Tify Gene Family AT3G21175 65.0 2.0e-37 152.9
Vvi5g554 . 1 201 Tify Gene Family AT4G14713 52.7 5.8e-48 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14336 PF06203 CCT 9.50E-16 CL0281 Vvi TF