Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g532 ATGGACGACGTTGATGATGACCCCCATATCAATTCCATCAACCCTATCGACCATGCTGGAGTCGTCGTCGCTTCTCGGACTAGCGAGCTCACTCTTGCTTTCGAGGGAGAGGTTTATGTCTTCCCTGCTGTTACCCCTGAAAAGGTGCAAGCGGTCCTCTTGCTTTTGGGAGGGCGTGATATACCTACTGGTGTGCCTACTATTGAAGTGCCTTTTGATCAAAGTAACAGGGGTGTGGGTGACCTCCCGAAGCGCTCGAATCTTTCAAGAAGAATAGCCTCCCTAGTTAGGTTTCGTGAAAAAAGGAAGGAGAGATGCTTTGACAAGAAAATCAGATACACTGTGCGAAAAGAGGTTGCTCAAAGGATGCATCGTAAGAATGGTCAGTTCGCTTCATTGAAAGAAAGCTCGGGTCCTTCAAATTGGGATTCTGCACAAAGCCTTCAAGGAGACACCACACCTCGTCCGGAAACTGTTCTTCGAAGATGTCAACATTGTGGTGTTAGTGAAAATTCTACTCCTGCAATGCGTCGTGGGCCAGCTGGGCCAAGGACTCTATGTAATGCTTGTGGGCTTATGTGGGCAAACAAGGGAACATTGAGAGATCTGAGTAAGGGAGGAAGAAATCTTTCTTTGGACCAGATTGAACTGGGAACCCCAATTGATGTCAAACCTTCAATCATGGAAGGAGAAAATTTTTCTGGCAGCCAAGATGAGCATATAACTCCTGAAGATCCTTCTAAGGCTGTTGCTGAAAGGACTGATAATCCTTCTGTGAATGCAGATGAGGAAGTAATGAGCAGTGGTGTTTATCCTTCTAGTTTCACTGATCTACATGAAACTGCTGATGATCTTTCACACACACTGCCTATGGGTATTGTCCATTCCTCGGGCAACCTTGATGACCAGGAAACTCTGGTTGAGCTTGCTAATGCTTCAGAGACAGAAATGGACATTCCTGGTCAAACTTGCTGA 975 46.15 MDDVDDDPHINSINPIDHAGVVVASRTSELTLAFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVPFDQSNRGVGDLPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGPSNWDSAQSLQGDTTPRPETVLRRCQHCGVSENSTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSLDQIELGTPIDVKPSIMEGENFSGSQDEHITPEDPSKAVAERTDNPSVNADEEVMSSGVYPSSFTDLHETADDLSHTLPMGIVHSSGNLDDQETLVELANASETEMDIPGQTC* 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6060380 6094675 + Vvi18g532 Vvi18g532 780235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g532 324 SMART GATA_3 157 210 IPR000679 GO:0006355|GO:0043565
Vvi18g532 324 Gene3D - 159 210 IPR013088 GO:0006355|GO:0008270
Vvi18g532 324 Pfam CCT motif 91 132 IPR010402 GO:0005515
Vvi18g532 324 Pfam GATA zinc finger 163 199 IPR000679 GO:0006355|GO:0043565
Vvi18g532 324 ProSitePatterns GATA-type zinc finger domain. 163 190 IPR000679 GO:0006355|GO:0043565
Vvi18g532 324 MobiDBLite consensus disorder prediction 227 273 - -
Vvi18g532 324 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 158 207 - -
Vvi18g532 324 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 323 - -
Vvi18g532 324 ProSiteProfiles CCT domain profile. 91 133 IPR010402 GO:0005515
Vvi18g532 324 ProSiteProfiles GATA-type zinc finger domain profile. 157 205 IPR000679 GO:0006355|GO:0043565
Vvi18g532 324 ProSiteProfiles Tify domain profile. 23 58 IPR010399 -
Vvi18g532 324 PANTHER GATA TRANSCRIPTION FACTOR 28 1 323 IPR045280 GO:0006355
Vvi18g532 324 Pfam tify domain 26 57 IPR010399 -
Vvi18g532 324 SMART tify_2 23 58 IPR010399 -
Vvi18g532 324 MobiDBLite consensus disorder prediction 125 156 - -
Vvi18g532 324 MobiDBLite consensus disorder prediction 130 154 - -
Vvi18g532 324 CDD ZnF_GATA 162 206 IPR000679 GO:0006355|GO:0043565
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14337 PF06203 CCT 1.20E-13 CL0281 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g532 - - vvi:100257426 648.662