Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g532 ATGGACGACGTTGATGATGACCCCCATATCAATTCCATCAACCCTATCGACCATGCTGGAGTCGTCGTCGCTTCTCGGACTAGCGAGCTCACTCTTGCTTTCGAGGGAGAGGTTTATGTCTTCCCTGCTGTTACCCCTGAAAAGGTGCAAGCGGTCCTCTTGCTTTTGGGAGGGCGTGATATACCTACTGGTGTGCCTACTATTGAAGTGCCTTTTGATCAAAGTAACAGGGGTGTGGGTGACCTCCCGAAGCGCTCGAATCTTTCAAGAAGAATAGCCTCCCTAGTTAGGTTTCGTGAAAAAAGGAAGGAGAGATGCTTTGACAAGAAAATCAGATACACTGTGCGAAAAGAGGTTGCTCAAAGGATGCATCGTAAGAATGGTCAGTTCGCTTCATTGAAAGAAAGCTCGGGTCCTTCAAATTGGGATTCTGCACAAAGCCTTCAAGGAGACACCACACCTCGTCCGGAAACTGTTCTTCGAAGATGTCAACATTGTGGTGTTAGTGAAAATTCTACTCCTGCAATGCGTCGTGGGCCAGCTGGGCCAAGGACTCTATGTAATGCTTGTGGGCTTATGTGGGCAAACAAGGGAACATTGAGAGATCTGAGTAAGGGAGGAAGAAATCTTTCTTTGGACCAGATTGAACTGGGAACCCCAATTGATGTCAAACCTTCAATCATGGAAGGAGAAAATTTTTCTGGCAGCCAAGATGAGCATATAACTCCTGAAGATCCTTCTAAGGCTGTTGCTGAAAGGACTGATAATCCTTCTGTGAATGCAGATGAGGAAGTAATGAGCAGTGGTGTTTATCCTTCTAGTTTCACTGATCTACATGAAACTGCTGATGATCTTTCACACACACTGCCTATGGGTATTGTCCATTCCTCGGGCAACCTTGATGACCAGGAAACTCTGGTTGAGCTTGCTAATGCTTCAGAGACAGAAATGGACATTCCTGGTCAAACTTGCTGA 975 46.15 MDDVDDDPHINSINPIDHAGVVVASRTSELTLAFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVPFDQSNRGVGDLPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGPSNWDSAQSLQGDTTPRPETVLRRCQHCGVSENSTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSLDQIELGTPIDVKPSIMEGENFSGSQDEHITPEDPSKAVAERTDNPSVNADEEVMSSGVYPSSFTDLHETADDLSHTLPMGIVHSSGNLDDQETLVELANASETEMDIPGQTC* 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6060380 6094675 + Vvi18g532 Vvi18g532 780235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g532 324 SMART GATA_3 157 210 IPR000679 GO:0006355|GO:0043565
Vvi18g532 324 Gene3D - 159 210 IPR013088 GO:0006355|GO:0008270
Vvi18g532 324 Pfam CCT motif 91 132 IPR010402 GO:0005515
Vvi18g532 324 Pfam GATA zinc finger 163 199 IPR000679 GO:0006355|GO:0043565
Vvi18g532 324 ProSitePatterns GATA-type zinc finger domain. 163 190 IPR000679 GO:0006355|GO:0043565
Vvi18g532 324 MobiDBLite consensus disorder prediction 227 273 - -
Vvi18g532 324 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 158 207 - -
Vvi18g532 324 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 323 - -
Vvi18g532 324 ProSiteProfiles CCT domain profile. 91 133 IPR010402 GO:0005515
Vvi18g532 324 ProSiteProfiles GATA-type zinc finger domain profile. 157 205 IPR000679 GO:0006355|GO:0043565
Vvi18g532 324 ProSiteProfiles Tify domain profile. 23 58 IPR010399 -
Vvi18g532 324 PANTHER GATA TRANSCRIPTION FACTOR 28 1 323 IPR045280 GO:0006355
Vvi18g532 324 Pfam tify domain 26 57 IPR010399 -
Vvi18g532 324 SMART tify_2 23 58 IPR010399 -
Vvi18g532 324 MobiDBLite consensus disorder prediction 125 156 - -
Vvi18g532 324 MobiDBLite consensus disorder prediction 130 154 - -
Vvi18g532 324 CDD ZnF_GATA 162 206 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g532 - - - vvi:100257426 648.662
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g532 . Blo12g00738 . . Bpe02g00146 Bpe04g00413 Bma04g00427 Bma01g02579 Cmo05g00563 Cmo12g00161 . . . . Sed03g1396 . Cpe07g00176 Bhi04g01396 Tan02g2466 Cmetu03g0931 . . . . . . . . . . . . . . . . . . . . . Bda11g00807 . . . . . . . . Cma12g00207 . . . . . . . . . . . . . . . . . . . Lsi08g01017 Csa02g02199 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi9g1014 . 1 164 Tify Gene Family AT3G21175 64.3 5.7e-48 188.0
Vvi3randomg10 . 33 166 Tify Gene Family AT3G21175 65.0 2.0e-37 152.9
Vvi18g531 . 7 208 Tify Gene Family AT4G24470 57.2 3.0e-58 222.6
Vvi3randomg10 . 33 224 Tify Gene Family AT4G24470 54.5 1.7e-48 190.3
Vvi9g1014 . 27 211 Tify Gene Family AT4G24470 55.3 2.3e-45 179.9
Vvi9g1014 . 1 241 Tify Gene Family AT1G51600 64.1 5.6e-78 288.1
Vvi3randomg10 . 33 211 Tify Gene Family AT1G51600 63.8 3.0e-55 212.6
Vvi18g532 . 14 216 Tify Gene Family AT1G51600 53.5 1.4e-49 193.7
Vvi18g531 . 3 209 Tify Gene Family AT1G51600 52.5 1.3e-47 187.2
Vvi18g531 . 7 208 Tify Gene Family AT4G24470 57.2 3.0e-58 222.6
Vvi3randomg10 . 33 224 Tify Gene Family AT4G24470 54.5 1.7e-48 190.3
Vvi9g1014 . 27 211 Tify Gene Family AT4G24470 55.3 2.3e-45 179.9
Vvi9g1014 . 1 241 Tify Gene Family AT1G51600 64.1 5.6e-78 288.1
Vvi3randomg10 . 33 211 Tify Gene Family AT1G51600 63.8 3.0e-55 212.6
Vvi18g532 . 14 216 Tify Gene Family AT1G51600 53.5 1.4e-49 193.7
Vvi18g531 . 3 209 Tify Gene Family AT1G51600 52.5 1.3e-47 187.2
Vvi9g1014 . 1 164 Tify Gene Family AT3G21175 64.3 5.7e-48 188.0
Vvi3randomg10 . 33 166 Tify Gene Family AT3G21175 65.0 2.0e-37 152.9
Vvi5g554 . 1 201 Tify Gene Family AT4G14713 52.7 5.8e-48 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14337 PF06203 CCT 1.20E-13 CL0281 Vvi TF