Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g539 ATGGCCCCAAAGGAATGCGAGTCTTTGATGTCTTCATACAAGAAGAGAAGGCAAGAAAAACTTGATATCTATTCTATTGTCAGAGCCAATAAGCCATTACAGTTGGTAGATGTCAGAGTTTCTGTGACCAAAGATGGGATGATTACAGTGAGTTTTGAAGGAGTTCATGGAAGCCCAGTGATCAATGGGATATGTATTCGGCGGGCACCACCATTAGCTGCATCCGAAGTGAAACATGGGTCTATTGCATGCAACAACTGTGCTGCAGAGATAGAATTATCTTCAGCTCAGAGCAAACTCATCAGAATGAAGTTTGCAGCCAAGTATGAAAAGAAAATAGAAGAGCTGAGTGGCCAATGTCAGCTCAAGTCAGACGAATGCTATGAGGCCTGGATGTCATTGACAGCTGCAAATAAGCAGCTAGAGGATGTTAGGGCGGAACTTGACAAAAGGATATTCCAAAATTATTATCAAGATCAAGCTATGGAAAAACAAGCTGAAAAGTTGAGGGATGCTTCTAATATGTATGAACACGATAAGAAGTTCTGGGTTGCATCTATTAATGAATTAGAAAGTAAAATAAAGAATATGAAGCGAGAGCATTCTCAACTCTCTTGTGAAGCACATAAATCTGCTAATTCAATTCCTGATTTGAATAAGATGATAATTGCAGTTCAAGCAATTGCAGTTGCAGAGTGTGATGATCTTAAATTGAAGTACAGCGAGGAGCAGGAAAAGAGGAAGAAGCTTTATAACCAAATTCAAGAAGCAAAAGGCAATCTTTTCTATCTAAAAAATCTGATGGTCTTTTGTAGGTGTCGCCCACTTAGTAAGGAAGAGGTAGCGTCTGGTCATGCCACAATTGTAGATTTCACTGCAGCCAAGGATGGAGAGCTTGCAATGCTCACAGGTGGTTCCACAAAGAAAATCTTCAAATTTGACCGGGTTTACACACCAAATGATGATCAAGTTGACATCTCTGCGGATGCCTCACCTATGGTAATTTCGGTGCTAGATGGCTACAATGTCTGTATATTTGCATATGGGCAAACAGGGACAGGAAAAACCTTCACAATGGAAGGTACCAATAAGAACCGAGGAGTCAATTATAGGACTTTGGAGCAGTTGTTTAAGATTGCAGAGGAAAGGAAAGAAATTTTTAAATATACAATATCTGTTAGCGTGCTTGAAGTCTACAATGAGCAAATCAGGGACCTGCTTGCCACTTCGCCAACATCAAAGAAGTTAGAGATAAGGCAAGCAACTGAAGGGGTCCATCATGTACCAGGGATTGTGGAAGCCAAAGTTGAGAACATTAAGGAGGTCTGGGATGTTCTGCAAGCTGGAAGCAATGGAAGGGCTGTAGGATCAAACAATGTGAATGAACACAGTAGCCGATCCCACTGTATGCTCTGCATAATGGTAAGAGCAAAGAATTTGATGAATGGTGAGTGCACAAATAGCAAGCTATGGCTGGTGGATTTGGCAGGCAGTGAGAGGCTAGCTAAAACTGAGGTGCAGGGAGAACGGCTTAAGGAAGCTCAAAACATTAATCGATCACTTTCAGCTCTTGGAGATGTAATATCTGCTTTAGCAACCAAAAGCAGTCATGTACCATACAGGAATTCCAAGCTCACACATTTACTACAAGATTCATTAGGGGGTGATTCAAAAACTTTGATGTTTGTGCAAATCAGTCCTTCAGAACAGGACTTGGGTGAAACTCTAAGTTCATTAAACTTTGCAACTCGAGTTCGAGGGGTGGAGTTAGGTCCTGCCAAGAAGCAGATTGATATGGGTGAGCTTCAAAGGATGAAAATGATGCTTGATAGAGTAAAGCAAGAATCCAACTCAAAAGATGAGGCTTTGCGGAAATTAGAAGAGAACTTTCAGAATTTGGAAGGTAAGGCCAAAAGCAGGGATCAGATTTACAGGAATCAAAAGGAAAAGGTTAATGAACTTGAACTCCAGCTTGAGTCAAAGACAGAGTCATGTAGACAGCTGGAGAAGCAGTTATTGCAACTCTCAGAGGAAGTGAAGAAGAAGGAGGAAATTGGCTTGACGCTCCAGCAAAAGGTCAAGGAACTAGAGAACAAAGTGAAAGAGCACGAGCTTGAGGAGTCCAAGACACACAAGGTCAAGGAGCTTGAAAACAAGTTGAAAGAGAGGACACAAGATTTTGAACTTCATACCAGTATCCTTAAACAAAAGATTAAGGAGCTTGAAAGCAAACTGGTAATGCAAGGCGAAAGCTTAGGATTCCAGTCACTCGAGAAAAAGAACAAGGGGCTTGAAGAAAAGTTGAGACAGCCAACACCAGGTTCTGCTGAGCGGCCAAGAGTTACCCCTAATGAACAAAAAGCCTGGTCAAGAACAGGAACCATGTGCGGCACAGATCCCCAAAGTCTAAGGAGCTTAAACTCTAGTAATGGAGCAATGAGCCAGTCTGGCTTGCTTAAAGGAGCTGATTCACTCCGAGAATTAAGGAGGAAAAGAGAGTTGCAAAGTAAAGGGATTGAGAACAATTTCCTACTGTCAGCTTCTCTAATTGAGCATAAGACCACCCTGCAGAAAGAATCAAATAAGGGTAGACATATCGACCCATCAAAAGCACTGGCCAGGGTTACAAGAATTACAAAACTAGCGACTGCTCAAAGACCCTTATCTAATAACAGAATCAACAGAGAACAACAGGCCACAGGAGTCAAGGAGAGGGACAATCGAACAAGGCATGCCAATCCTCCTAAAGAAGGTGGATGCCAGATATTATCAAACTTTCTTTACACGGTCTTCTAA 2796 41.81 MAPKECESLMSSYKKRRQEKLDIYSIVRANKPLQLVDVRVSVTKDGMITVSFEGVHGSPVINGICIRRAPPLAASEVKHGSIACNNCAAEIELSSAQSKLIRMKFAAKYEKKIEELSGQCQLKSDECYEAWMSLTAANKQLEDVRAELDKRIFQNYYQDQAMEKQAEKLRDASNMYEHDKKFWVASINELESKIKNMKREHSQLSCEAHKSANSIPDLNKMIIAVQAIAVAECDDLKLKYSEEQEKRKKLYNQIQEAKGNLFYLKNLMVFCRCRPLSKEEVASGHATIVDFTAAKDGELAMLTGGSTKKIFKFDRVYTPNDDQVDISADASPMVISVLDGYNVCIFAYGQTGTGKTFTMEGTNKNRGVNYRTLEQLFKIAEERKEIFKYTISVSVLEVYNEQIRDLLATSPTSKKLEIRQATEGVHHVPGIVEAKVENIKEVWDVLQAGSNGRAVGSNNVNEHSSRSHCMLCIMVRAKNLMNGECTNSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISALATKSSHVPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLGETLSSLNFATRVRGVELGPAKKQIDMGELQRMKMMLDRVKQESNSKDEALRKLEENFQNLEGKAKSRDQIYRNQKEKVNELELQLESKTESCRQLEKQLLQLSEEVKKKEEIGLTLQQKVKELENKVKEHELEESKTHKVKELENKLKERTQDFELHTSILKQKIKELESKLVMQGESLGFQSLEKKNKGLEEKLRQPTPGSAERPRVTPNEQKAWSRTGTMCGTDPQSLRSLNSSNGAMSQSGLLKGADSLRELRRKRELQSKGIENNFLLSASLIEHKTTLQKESNKGRHIDPSKALARVTRITKLATAQRPLSNNRINREQQATGVKERDNRTRHANPPKEGGCQILSNFLYTVF* 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6227652 6234972 + Vvi18g539 Vvi18g539 780242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g539 931 CDD KISc_C_terminal 266 590 - -
Vvi18g539 931 Coils Coil 106 126 - -
Vvi18g539 931 Coils Coil 233 260 - -
Vvi18g539 931 Coils Coil 609 726 - -
Vvi18g539 931 MobiDBLite consensus disorder prediction 898 913 - -
Vvi18g539 931 ProSitePatterns Kinesin motor domain signature. 488 499 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi18g539 931 MobiDBLite consensus disorder prediction 785 800 - -
Vvi18g539 931 PRINTS Kinesin heavy chain signature 340 361 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g539 931 PRINTS Kinesin heavy chain signature 458 475 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g539 931 PRINTS Kinesin heavy chain signature 489 507 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g539 931 PRINTS Kinesin heavy chain signature 538 559 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g539 931 SMART kinesin_4 264 596 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g539 931 PANTHER KINESIN-LIKE PROTEIN KIF3A 19 900 - -
Vvi18g539 931 Pfam Kinesin motor domain 272 587 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g539 931 Coils Coil 180 207 - -
Vvi18g539 931 MobiDBLite consensus disorder prediction 885 918 - -
Vvi18g539 931 ProSiteProfiles Kinesin motor domain profile. 266 588 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g539 931 Gene3D Kinesin motor domain 264 631 IPR036961 -
Vvi18g539 931 MobiDBLite consensus disorder prediction 763 800 - -
Vvi18g539 931 PANTHER KINESIN-LIKE PROTEIN KLP-3 19 900 - -
Vvi18g539 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 624 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g539 K10406 KIFC2_3; kinesin family member C2/C3 - vvi:100250527 1687.55
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g539 . . . . . . . . . . . Cma09g00335 . . . Cpe06g00238 . . . . . . . . . . . . . . . . . . . . Csa04g02535 . . . . . . . . . . . . Cmo09g00336 . . . . . Cpe02g00257 . . . . . . . Cla05g01828 . . . . . . . . Chy07g00239 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003005 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 47