Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g540 ATGGTTGGTGAAAGACTGTATATCGTGTTGCTGAAAGATCGTGACAAAGATAAATCCCCTACAGGTGGGCATGGAAAACTAACTGATCCAAACTCCAAAAATTCCAAGGTTCATCGGAAACCTCCTCAGAGTTTTGTAAATGTGATTGAGCTTCTTTTGGATTCAGTAATTAGTTTTGTACCTCCCTCGAAAGATGAAACTGTGGTAAATGTGCCCCTTGACAGCCCCTCATTAGCTGCCATGGACATTGATGTTGCTGCAAGTAAGGGGAAAGGAAAAGCCATTGTCACTACACCTGAAGAGAATGATTTCAATAACCAGGAAGCTTCTGCATCTCTTGCTAAGATTGTGTTCATTTTGAAGCTTTTGACAGAGATTCTCTTGATGTATTCTTCATCTGTTAATGTTCTACTCCGAAAGGATGCTGAAGTTAGTGGCTGCAGGGCTCCCCCTCAAAGGGGTCCTACTGTGTACTGCATTACTGGAATATTCCACCATATTCTTCACAGGTTTCTTCCATATTCCAGAAATTCCAAAAAGGAAAAGAAAATTGATGGTGATTGGATGCATAAACTAGCAACCCGGGCTAGCCAATTTTTAGTGGCAGCTTGTGTTCGCTCTACAGAAGCAAGGAGAAGGGTTTTCACAGAGATCAGTAATATACTTAATGACTTTGTTGATTCATCTAATGGTTTTAGGCCACCCGGCAATGATATCCAAGCTTTTATTGATCTGCTCAATGATGTATTGGCTGCTCGGTCACCTACAGGTGCTTATATCTCAGCAGAAGCTTCAGCTACTTTCATAGATGTGGGTCTTGTTAGGTCATTGACTCGAACTCTCCAAGCATTGGACTTGGATCATGTTGACTCACCAAAAGCTGTTACGGGGCTTATCAAGGCGCTGGAGGTGGTAACCAAAGAACATGTCCATTCTGCTGATTCTAATACAGGTAAGGGTGAGAATTCTACAAAGCCTCCTGATCACAATCAACCTGGAAGAGTAGATGATAGTGCTGATGTATCACAATCCATGGAAACTTCATCTCAACCTAATCATGATGTTACTGCAGCTGATCATGTTGAGTCTTTTAATACCACTCAAACCTATGGTGGGTCTGAGGCTGTTACTGATGATATGGAACATGACCAGGATCTAGATGGAGGTTTTGTTCCTTCTACTGAAGATGATTATATGCATGAAACTTCTGGGGATCCAAGGGTTATGGAAAATGGCATTGATACTGTGGTTATACTTAGGCTGGAGGAAGGCATAAATGGAATAAATGTTTTTGACCATATTGAGGTTTTTGGTAGGGACCATAGCTTTTCTAATGAAACTCTCCATGTGATGCCAGTTGAAGTTTTTGGCTCTAGACGTCATGGTCGTACCACATCTATTTATAATCTCTTGGGAAGAACTGGTGACAATGCTGCACCCTCTCGACATCCTCTTTTGGTGGAACCATCATCCTCACTACAAACACCCCCTCTGAGACAGTCAGAGAATGCCCGTGATGTGATCTTATCTGATAGGAATTCGGAGAACACTGCATCACGGTTGGATACAATTTTCCGATCACTGAGGAATGGGCGTCATGGACACCGACTCAATCTTTGGGTGGATGATAACCAGCAAGGTGGTGGATCAAATGCATCTGCTGTTCCCCAAGGCCTTGAAGAGTTGCTTGTTTCTCAGTTGAGGCGGCCTGCCCCTGAGAAACCTTCTGATGAGAATACAACAGTTGAACATGAAAGTAAGCCCCAGGTTAGTCAATCACAAGAATCAGAAGCAGACATAAGGCCTGAAACTGCTGTTGAAAACAATGTGAACAATGAACCCAGTTGTGTGCCTCCCCCTACTTCTGTTGCAATGGATAGCATTGATAATGCTGATACAAGACCTGCAGCCACCGAATCTCTGCAAGGAACAGATGCATCAAGTATGCATTCTCAATCTGTTGAAATGCAGTTTGAACACAATGAGGCAGCTGTGCGGGATGTTGAAGCAGTGAGCCAAGAAAGTAGTGGGAGCGGGGCAACACTAGGGGAAAGCCTTCGGAGCCTAGACGTTGAAATTGGAAGTGCTGATGGGCATGATGATGGTGGAGAGAGGCAAGGTTCAGCAGATAGAATGCCTTTGGGTGATATGCAGGCAACTCGAACAAGAAGGACCAATGTGTCCTTTGGGAATTCTACACCACTAAGCGGTAGAGATGCATCTCTTCACAGTGTAACTGAAGTTTCTGAAAATCCTAGCCAAGAAGCAGATCAGGTTGGTCCTGGGGAGGAGCAGCAAATCAATGCCGATGCTGATTCTGGATCCATTGATCCTGCTTTCCTGGATGCTCTGCCTGAGGAGCTGCGAGCCGAAGTTCTTTCTGCTCAACAGGGTCAGGTGGCACAGCCTTCAAACACTGAACAGCAAAATACTGGAGATATTGATCCAGAATTCCTGGCAGCCCTTCCGCCGGACATCCGAGCAGAAGTTCTGGCTCAACAACAAGCACAAAGGCTGCATCAATCACAGGAACTGGAAGGCCAACCAGTTGAAATGGATACTGTCTCAATAATTGCAACATTTCCATCGGATCTGCGAGAAGAGGTTCTCTTAACATCATCTGATGCTATCCTTGCCAATCTCACTCCTGCTCTTGTTGCTGAAGCAAACATGCTCCGTGAAAGGTTTGCACATCGTTATCATAATCGTACCCTCTTTGGTATGTACCATAGAAACCGCAGAGGTGAGTCTTCAAGAAGGGGTGAAGGTATTGGATCCAGCCTGGACAGAGCTGGTGGAAGCATTGTTCCACGCAGGTCTATGGGAGGCAAACTTGTTGAAGCTGATGGGGCTCCTTTAGTTGATACAGAAGCTTTGAAAGCTATGATTCGGTTGCTTCGTGTTGTCCAGCCACTTTATAAAGGACAGCTGCAAAGGCTTCTCTTGAATTTATGTGCTCACAGTGAAACCCGAATTGCTCTGGTGAAACTCCTCATGGACATGCTGATGCTTGACACGAGGAAGCCTGCCAATCATTTAAACACTTCTGAGCCATCATATCGGCTTTATGCTTGCCAAAGTCATGTGATGTATTCTCGTCCTCAATATTTTGATGGAGTTCCTCCCTTGGTGTCTCGACGTATTCTCGAAACAATGACCTACCTGGCTCGAAATCACCCTTATGTGGCAAAAATTTTGCTTCAGTATAGGCTTCCTCATCCGCCCTTACAGGAGCCAGAGAACCTTGATCAGGTACGTGGCAAGGCTGTGATGGTGATTGAGGATGAAGTTGTAGATAAAAAGCTGCATCAGGAAGGATACCTGTCTGTTGCTTTGCTGTTGAGTCTCTTGAATCAGCCCCTTTATTTGAGGAGTATAGCTCATCTGGAGCAGCTTCTAAATTTATTGGAGGTCATCATTGACGATGTGGAAAGCAAGTCAAGTGTGTCTGACAAATCTGGGCCATCATCTACTGGGCAGCCATCTGGCCCTCAGGTTTCTATATCAGATGCTGAGATAAATGCAGACTCTGGTGGTGTTTCTGGGGTTGGAGTTACATCATCCAAAGTTGATGATTCCTCCAAACCTTCAGCTTTTGGTTCACATAGAGAATGTGATGCCCATAGTGTACTGCTTAACCTACCTCAATCAGAACTTCGACTTTTATGCTCATTGCTTGCACGAGAAGGTTTGTCAGACAATGCATATTCGCTTGTGGCGGAGGTACTGAAGAAGTTAGTGGCAATTGCTCCAACTCATTGTCATCTGTTTATCACTGAGCTAGCATTTTCTGTGCAAAATTTGACTAAATCTGCAATGGATGAATTGCACACTTTTGGAGAAACTGAAAAGGCACTCCTTAGTTCATCATCTTCTGATGGAGCTGCAATTCTGAGAGTTCTGTTGGCATTAAGTTCTCTTGTTGCCTCACTTAATGAGAAGGAGAAGGATCAGCAAGTTCTTCCTGAAAAGGAGCAGACTGCTGCTCTTTCTCAGGTATGGGATATCCATGCAGCCTTAGAACCTTTGTGGCTAGAGCTAAGCACTTGCATAAGCAAAATAGAGAGCTATTCAGATTCTGCAACTAACATCTTACCATACATAGAGTCATTCTTTGTGATGTGTGAGAAATTACATCCTGGGCAGCCAGGTGCAAGTCAGGACTTCATGTCTGTTCTGAAAGTTGATGAAAAACACATTGCTTTTGTGAAGTTCTCAGAGAAGCACCGGAAGCTCCTAAATGCTTTTATCCGGCAAAACCCTGGGTTGCTAGAGAAGTCTTTCTCACTCATGTTGAAGGTTCCCCGCTTTATTGATTTTGACAACAAGCGTTCCCACTTTAGGTCAAAGATAAAGCATCAACATGATCATCATCACAGTCCTTTAAGAATTTCAGTGAGAAGAGCTTACATTCTTGAAGATTCATATAACCAACTGCGCATGCGGTCGACTCAAGATTTAAAAGGGAGATTGACTGTTCACTTCCAAGGTGAGGAAGGTATTGATGCAGGTGGGCTTACAAGGGAATGGTATCAGTCGTTGTCCAGGGTTATTTTTGACAAGGGAGCTCTACTATTTACAACAGTGGGCAATGAATCAACATTTCAGCCAAACCCCAACTCAGTTTACCAAACAGAACATCTCTCATACTTTAAGTTTGTTGGCAGAGTTGTTGGAAAAGCACTTTTTGATGGACAACTTCTGGATGTCCATTTCACTCGATCTTTCTACAAGCATATACTAGGGGTAAAAGTTACATATCATGATATTGAAGCCATTGATCCTGATTACTTCAAAAACCTAAAATGGATGCTTGAGAATGATATAACTGATGTTCTAGACGTTACTTTTAGCATTGATGCTGATGAGGAGAAATTGATATTGTATGAAAGGAATGAGGTGACAGACTGTGAATTGATCCCGGGTGGAAGGAACATTCGAGTTACTGAGGATAACAAGCATAAATATGTTGATTTGGTTGCTGAGCATCGGTTGACTACTGCTATTCGTCCTCAAATAAATGCATTTTTGGAAGGATTCAATGAATTAATTCCTCGGGATTTAATATCCATTTTTAATGATAAGGAACTAGAATTGTTGATAAGTGGGCTTCCAGATATTGATTTGGACGACATGAGGGCAAATACCGAGTATTCTGGCTATAGTCCTGCGTCCCCTGTCATCCAATGGTTTTGGGAGGTTGTTCAAAGTCTAAGCAAGGAGGATAAGGCTCGGCTTCTTCAGTTTGTGACTGGAACCTCAAAGGTTCCTTTGGAGGGCTTCAGTGCACTTCAAGGAATTTCTGGCTCCCAGAAGTTCCAGATTCACAAGGCATATGGAAGCCCCGATCACTTGCCTTCTGCACATACATGTTTCAACCAGCTAGATCTGCCAGAGTATCCTTCTAAACAACATCTAGAGGAGAGACTGCTTCTTGCAATTCATGAAGCTAACGAAGGATTTGGATTTGGTTAA 5475 43.51 MVGERLYIVLLKDRDKDKSPTGGHGKLTDPNSKNSKVHRKPPQSFVNVIELLLDSVISFVPPSKDETVVNVPLDSPSLAAMDIDVAASKGKGKAIVTTPEENDFNNQEASASLAKIVFILKLLTEILLMYSSSVNVLLRKDAEVSGCRAPPQRGPTVYCITGIFHHILHRFLPYSRNSKKEKKIDGDWMHKLATRASQFLVAACVRSTEARRRVFTEISNILNDFVDSSNGFRPPGNDIQAFIDLLNDVLAARSPTGAYISAEASATFIDVGLVRSLTRTLQALDLDHVDSPKAVTGLIKALEVVTKEHVHSADSNTGKGENSTKPPDHNQPGRVDDSADVSQSMETSSQPNHDVTAADHVESFNTTQTYGGSEAVTDDMEHDQDLDGGFVPSTEDDYMHETSGDPRVMENGIDTVVILRLEEGINGINVFDHIEVFGRDHSFSNETLHVMPVEVFGSRRHGRTTSIYNLLGRTGDNAAPSRHPLLVEPSSSLQTPPLRQSENARDVILSDRNSENTASRLDTIFRSLRNGRHGHRLNLWVDDNQQGGGSNASAVPQGLEELLVSQLRRPAPEKPSDENTTVEHESKPQVSQSQESEADIRPETAVENNVNNEPSCVPPPTSVAMDSIDNADTRPAATESLQGTDASSMHSQSVEMQFEHNEAAVRDVEAVSQESSGSGATLGESLRSLDVEIGSADGHDDGGERQGSADRMPLGDMQATRTRRTNVSFGNSTPLSGRDASLHSVTEVSENPSQEADQVGPGEEQQINADADSGSIDPAFLDALPEELRAEVLSAQQGQVAQPSNTEQQNTGDIDPEFLAALPPDIRAEVLAQQQAQRLHQSQELEGQPVEMDTVSIIATFPSDLREEVLLTSSDAILANLTPALVAEANMLRERFAHRYHNRTLFGMYHRNRRGESSRRGEGIGSSLDRAGGSIVPRRSMGGKLVEADGAPLVDTEALKAMIRLLRVVQPLYKGQLQRLLLNLCAHSETRIALVKLLMDMLMLDTRKPANHLNTSEPSYRLYACQSHVMYSRPQYFDGVPPLVSRRILETMTYLARNHPYVAKILLQYRLPHPPLQEPENLDQVRGKAVMVIEDEVVDKKLHQEGYLSVALLLSLLNQPLYLRSIAHLEQLLNLLEVIIDDVESKSSVSDKSGPSSTGQPSGPQVSISDAEINADSGGVSGVGVTSSKVDDSSKPSAFGSHRECDAHSVLLNLPQSELRLLCSLLAREGLSDNAYSLVAEVLKKLVAIAPTHCHLFITELAFSVQNLTKSAMDELHTFGETEKALLSSSSSDGAAILRVLLALSSLVASLNEKEKDQQVLPEKEQTAALSQVWDIHAALEPLWLELSTCISKIESYSDSATNILPYIESFFVMCEKLHPGQPGASQDFMSVLKVDEKHIAFVKFSEKHRKLLNAFIRQNPGLLEKSFSLMLKVPRFIDFDNKRSHFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQSLSRVIFDKGALLFTTVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYFKNLKWMLENDITDVLDVTFSIDADEEKLILYERNEVTDCELIPGGRNIRVTEDNKHKYVDLVAEHRLTTAIRPQINAFLEGFNELIPRDLISIFNDKELELLISGLPDIDLDDMRANTEYSGYSPASPVIQWFWEVVQSLSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSPDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEANEGFGFG* 1825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6235026 6247312 - Vvi18g540 Vvi18g540 780243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g540 1824 MobiDBLite consensus disorder prediction 693 774 - -
Vvi18g540 1824 MobiDBLite consensus disorder prediction 569 628 - -
Vvi18g540 1824 MobiDBLite consensus disorder prediction 309 357 - -
Vvi18g540 1824 MobiDBLite consensus disorder prediction 1149 1170 - -
Vvi18g540 1824 Coils Coil 1126 1146 - -
Vvi18g540 1824 MobiDBLite consensus disorder prediction 488 511 - -
Vvi18g540 1824 Gene3D - 812 841 - -
Vvi18g540 1824 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 3 418 - -
Vvi18g540 1824 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 422 1823 - -
Vvi18g540 1824 Gene3D Hect, E3 ligase catalytic domain 1705 1824 - -
Vvi18g540 1824 MobiDBLite consensus disorder prediction 719 761 - -
Vvi18g540 1824 MobiDBLite consensus disorder prediction 585 618 - -
Vvi18g540 1824 ProSiteProfiles HECT domain profile. 1483 1824 IPR000569 GO:0004842
Vvi18g540 1824 Gene3D Hect, E3 ligase catalytic domain 1584 1668 - -
Vvi18g540 1824 Gene3D Hect, E3 ligase catalytic domains 1438 1701 - -
Vvi18g540 1824 SMART hect_3 1481 1824 IPR000569 GO:0004842
Vvi18g540 1824 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL2-LIKE ISOFORM X1 3 418 - -
Vvi18g540 1824 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL2-LIKE ISOFORM X1 422 1823 - -
Vvi18g540 1824 MobiDBLite consensus disorder prediction 693 707 - -
Vvi18g540 1824 MobiDBLite consensus disorder prediction 13 40 - -
Vvi18g540 1824 MobiDBLite consensus disorder prediction 1147 1170 - -
Vvi18g540 1824 CDD HECTc 1462 1822 IPR000569 GO:0004842
Vvi18g540 1824 SUPERFAMILY Hect, E3 ligase catalytic domain 1453 1816 IPR035983 GO:0004842
Vvi18g540 1824 Pfam Ubiquitin binding region 810 839 IPR025527 -
Vvi18g540 1824 Pfam Ubiquitin binding region 847 878 IPR025527 -
Vvi18g540 1824 Pfam Ubiquitin binding region 769 800 IPR025527 -
Vvi18g540 1824 MobiDBLite consensus disorder prediction 336 357 - -
Vvi18g540 1824 Pfam HECT-domain (ubiquitin-transferase) 1513 1823 IPR000569 GO:0004842
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g540 - - - vvi:100255704 3158.24
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g540 . Blo12g01013 . . . . . . . Cmo12g00165 . . . Car12g00192 Sed04g0191 . Cpe07g00180 Bhi04g01402 Tan02g2453 Cmetu03g0486 . . . . Cla08g01683 Cam08g2186 Cec08g1775 Cco08g1894 Clacu08g1874 . . Cone4ag1286 Cone7ag0867 . . . . . Cme03g02136 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01561 . Chy03g01627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007206 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 2 1 2 37