Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g545 ATGTCGCCTCTGGGAGTACAACTGTATATTCAAGATCGTCATGTGGTAATGGATAATGGCATCCTTCAAGTTACATTATCAAATCCAGGGGGAATTGTCACTGGGATCCGATATAGTGCCATTGACAATCTGCTTGAAGTTCTTAATGATGAAACTAACAGAGGTTACTGGGACCTTGTTTGGAGTGTACCAGGAAGTGCTGGAATCTTTGATGTGATTAAGGGAACAAATTTTAGGGTGATAGTGGAAAATGAAGAACAAGTAGAGATCTCATTCACAAGAATGTGGGATCCCTCACTTGAGGGCAAGTTGGTACCGTTGAATATAGATAAAAGGTTTATAATGCTTCGAGGTTCCTCAGGCTTCTACTCCTATGCCATTTATGAGCACTTAAAGGAATGGCCTGCTTTCACCCTTGCTGAAACTAGGATTGCATTCAAGCTCAGAAAAGACAACACAGTTTTAAAAGGGAAAATGAAGAAACACAGGTTGTTTCACTACATGGCCATGGCAGATAACAGGCAACGGTTCATGCCCTTGCCAGACGATAGGTTACCAGGACGAGGCCAACCCTTGGCCTACCCAGAAGCAGTTTTACTTGTCAATCCTGTGGAGCCAGAATTCAAAGGAGAGGTGGATGACAAGTATCAATACTCTTGTGATAACAAAGATAACCGGGTCCATGGGTGGGTATGCCTTGAACCCCCAGTGGGGTTCTGGCAAATTACACCCAGTGATGAGTTTCGAACTGGTGGGCCCGTCAAACAGAATCTAACCTCACATGTGGGCCCTACAACCCTTGCAATGTTTCACAGTGCTCATTATGCGGGAGAGCCCCTGGTGCCCAAATTTGGACCTGACGAGCCATGGAAGAAAGTTTTTGGCCCAGTTTTTATCTATGTCAATTCTGTTTTTGGTGACGGTGACCCATTTTGGCTATGGGAAGATGCCAAGGAACAGATGACGATTGAAGTCCAAAGCTGGCCCTACAGCTTCCCAGCCTCAGAGGATTTTCCATCTTCAGATCAGCGGGGCAATGTTAGTGGCAGATTACTAGTCCAAGATGGGTATATCAGCGATGACTATATATTAGCAAGCTGTGCTTATGTCGGATTGGCGCCACCAGGAGATGTTGGATCATGGCAAAGAGAATGCAAGGACTACCAATTCTGGACCCAAGCCGACCTGGGAGGCTATTTCTGCATTAATGATATTCGACCCGGTGACTATAATCTTTACGCATGGGTCCCGGGTTTTATTGGGGATTATAAATTAGATGCTGTCATTACCATAACCCCAGCAGGCTGTGATGTTTTTGTGGGTGATCTTCTATATGAGCCTCCAAGAGACGGACCTACATTGTGGGAAATAGGCATTCCTGATCGTTCTGCCGCAGAGTTCTACAGTCCTGATCCAAACCCAACTTATGTCAACAAACTATTTATCGGTCATCCTGACAGGTTTAGGCAGTATGGATTATGGGAAAGATATGCAGAATTATATCCTGATGGTGATTTAGTTTACACAATTGGTGTCAGTGACTATACTAAAGATTGGTTCTTTGCTCAGGTCACCAGGAAGAAGGATAACAACACATATCAAGGAACTACATGGCAAATTAAGTTCACACTCGACACCGTGGATCAGATCGGAACCTACAAGCTGAGAGTGGCAATTGCCTCAGCAACACTTTCCGAGTTGCAGGTCCGGGTCAATGATCCAAAAGCAAATCCTCCTCATTTTACAAGTGGGCTAATAGGGAGGGACAACACAATTGCGAGACATGGCATTCATGGGCTCTACTGGCTTTATAGTGTGAATGTACTGGGGAATCTGCTTGTGGAAGGTGAGAATACCATTTTCCTCACGCAGCCAAGGAGTACCAGCCCTTTCCAGGGGATCTTGTATGACTATATTCGTTTAGAAGGTCCTCCGTCTCCCAATTCCAATTCCAGCAAGAAGCTTGCTTGA 1971 45.05 MSPLGVQLYIQDRHVVMDNGILQVTLSNPGGIVTGIRYSAIDNLLEVLNDETNRGYWDLVWSVPGSAGIFDVIKGTNFRVIVENEEQVEISFTRMWDPSLEGKLVPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPAFTLAETRIAFKLRKDNTVLKGKMKKHRLFHYMAMADNRQRFMPLPDDRLPGRGQPLAYPEAVLLVNPVEPEFKGEVDDKYQYSCDNKDNRVHGWVCLEPPVGFWQITPSDEFRTGGPVKQNLTSHVGPTTLAMFHSAHYAGEPLVPKFGPDEPWKKVFGPVFIYVNSVFGDGDPFWLWEDAKEQMTIEVQSWPYSFPASEDFPSSDQRGNVSGRLLVQDGYISDDYILASCAYVGLAPPGDVGSWQRECKDYQFWTQADLGGYFCINDIRPGDYNLYAWVPGFIGDYKLDAVITITPAGCDVFVGDLLYEPPRDGPTLWEIGIPDRSAAEFYSPDPNPTYVNKLFIGHPDRFRQYGLWERYAELYPDGDLVYTIGVSDYTKDWFFAQVTRKKDNNTYQGTTWQIKFTLDTVDQIGTYKLRVAIASATLSELQVRVNDPKANPPHFTSGLIGRDNTIARHGIHGLYWLYSVNVLGNLLVEGENTIFLTQPRSTSPFQGILYDYIRLEGPPSPNSNSSKKLA* 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6286735 6292127 - Vvi18g545 Vvi18g545 780248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g545 656 Pfam Polysaccharide lyase family 4, domain III 453 641 IPR029411 -
Vvi18g545 656 Pfam Rhamnogalacturonate lyase family 9 212 IPR010325 -
Vvi18g545 656 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 646 - -
Vvi18g545 656 CDD RGL4_N 11 303 - -
Vvi18g545 656 Pfam Polysaccharide lyase family 4, domain II 367 437 IPR029413 -
Vvi18g545 656 Gene3D - 340 433 - -
Vvi18g545 656 SUPERFAMILY Starch-binding domain-like 341 426 IPR013784 GO:0030246
Vvi18g545 656 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 646 - -
Vvi18g545 656 CDD RGL4_M 343 435 IPR029413 -
Vvi18g545 656 Gene3D - 451 642 - -
Vvi18g545 656 CDD RGL4_C 455 642 - -
Vvi18g545 656 SUPERFAMILY Galactose-binding domain-like 450 642 IPR008979 -
Vvi18g545 656 Gene3D - 201 294 IPR014718 GO:0030246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g545 K18195 - vvi:100247189 1318.91