Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g548 ATGGGGAGAGGAAAGATCGTGATTCGGAGGATCGACAATTCCACTAGCAGGCAAGTGACGTTCTCGAAGCGGAGAAGCGGACTGCTGAAAAAGGCTAAGGAGCTGGCGATCTTGTGCGATGCCGAAGTAGGAGTGATAATCTTCTCCAGCACTGGAAAGCTCTATGATTACGCAAGCACCAGCATTAAATCAATAACTGAGCGCTATATCAAAGCAAAAGAGGAACACCAACAACTGGTTAACCCAACTTCAGAAGTCAAGTTCTGGCAACGGGAGGCAGCAATGTTGAGGCAACAACTGCAACACTTGCAAGAAAATCATCGGCAAATGATGGGCGAAGAGCTTTCTGGTTTGAGTGTCAAAGATTTGCAGAATTTGGAGAACCAATTGGAAATGAGTCTTCGAGGTGTCCGTATGAAAAAGGACCAAATTTTAATTGATGAAATACAGGAACTAAACCAAAAGGGAAACCTTCTTCACAACGAAAATGTGGAATTGTATAAGAAGGTAAACTTAATTCGTCAAGAAAACATGGAATTATATAAGAAGGTTTATGGAACAAGGGAAGTGAATGGAACAAACAGAAATGCCTTCACAAATGGTTTAAGCATTGGAGAGGACTTGCATGTGCCCATCCATCTCCAGCTTTGCCAGCCACAGCAACAAAACTATGAGACGACACCAGCAAGAGCTACAAAACTGGGCAGACTACAACTGCAATAG 723 43.15 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVIIFSSTGKLYDYASTSIKSITERYIKAKEEHQQLVNPTSEVKFWQREAAMLRQQLQHLQENHRQMMGEELSGLSVKDLQNLENQLEMSLRGVRMKKDQILIDEIQELNQKGNLLHNENVELYKKVNLIRQENMELYKKVYGTREVNGTNRNAFTNGLSIGEDLHVPIHLQLCQPQQQNYETTPARATKLGRLQLQ* 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6350900 6376307 + Vvi18g548 Vvi18g548 780251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g548 240 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi18g548 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi18g548 240 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Vvi18g548 240 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vvi18g548 240 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 238 - -
Vvi18g548 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi18g548 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi18g548 240 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi18g548 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi18g548 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi18g548 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi18g548 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 238 - -
Vvi18g548 240 Coils Coil 86 113 - -
Vvi18g548 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi18g548 240 Gene3D - 13 113 IPR036879 GO:0003677|GO:0046983
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14339 PF01486 K-box 1.50E-27 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g548 K09264 - tcc:18591843 406.757