Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g549 ATGTCCTCTGCAAACCGACATCATTTGGACTTTCTGCGTTTATTAGATTCAACTGCTCCAGATCCTAAATGCAACAAAAATAAAAGCAAAACCAAAATTGTACACTATGGACTTTCAATCCCTCCATTTCATCTTCAGCAAAAGACCCCTTTGCCTATTCCCATTTTCATAATCTTTGCGCTAATCATCTCAGTTGTCTCAATATGTTGCATTAACCAACAAACACTCTTTCCCTGCTTTTCTCTCTCTGGATTCAGTTTTTATGTACAGACAACTTGCAAGGAAAGCGGCGTTGGGCAGGCAATGAAGCTCTTAGATGAGATGAGGAATAAAGGTAGTAAGCCTGATGTTGTCACTTATAATGTTCTTATTAATGGGATTTGCAAGGAAGGGAGGTTGGATGAAGCAATCAAATTCTTGAATAATATGCCATCGTATGGTTGCCAACCTAATGTGATTACCCATAATATCATTTTGCGGAGTATGTGTAGTACGGGAAGGTGGATGGATGCCGAGAAACTCTTATCTGACATGCTTCGAAAAGGATGTTCTCCTAGTGTTGTCACCTTCAATATCTTGATTAACTTCTTGTGTCGGCAGGGACTATTGGGCAGGGCGATTGACATTTTGGAGAAAATGCCTATGCATGGATGCACTCCTAATTCATTGAGCTATAATCCATTGCTTCATGGGTTTTGCAAAGAAAAGAAGATGGATAGAGCAATTGAATATCTGGACATAATGGTGTCTCGGGGGTGTTATCCAGATATTGTGACCTATAATACTTTGCTCACTGCTTTATGCAAAGATGGGAAGGTTGATGTTGCAGTTGAGATTCTTAATCAGTTAAGTAGCAAAGGTTGTTCTCCTGTTTTAATAACTTATAATACAGTTATTGATGGGCTTTCAAAGGTGGGGAAAACGGAACGAGCCATAAAGTTGTTGGATGAGATGCGCAGGAAGGGTCTCAAACCTGATATAATTACCTACTCTTCGCTTGTCTCAGGGCTTAGTAGAGAAGGAAAGGTTGATGAAGCCATTAAGTTTTTTCATGACTTGGAAGGATTAGGTATCAGGCCCAACGCAATCACCTATAATTCTATCATGTTGGGACTGTGCAAGTCTCGGCAAACTGATCGGGCCATTGACTTCTTGGCTTATATGATATCCAAGCGATGTAAACCCACTGAAGCTACATACACCATTCTCATTGAAGGTATTGCATATGAAGGTTTAGCCAAGGAAGCTCTGGACTTGTTGAATGAGCTGTGCTCCAGGGGACTTGTGAAGAAAAGCTCAGCAGAACAGGTGGCAGCTCCTGTTCTTCTTTTTTTTTTTGCCCCTTTCTTTTCTTTTGTACGTATACTATGGCATCTTCTCTACCACACACTCAAAATCCTTAACGAGAGAGGGAGAGAGACCTCAGAAACATTTCTTCATCTATCAGGTATTGTCATATTGATGGATCCCAAAAAACCAGGTGATGAAGAAGAAGGGGGGTTGCTATCGTGCTGGGGTAATCTTAAGCTGAAGTTTCCATGCAACAAAGGAAGAAGGAACACTCAGACAAGGCACAGACGTGTAGGTTGGAAAATAATGGAAGCTTTCAAGCCCAAAAGACCCAAACCGTTTAGTAGTTTCAGGTACGACCCTTTAAGCTATGCTCAAAACTTTGATGATGGCTGTTGGGATGAGGATTGTGAGGGTTCTTCCAATCGCGGCTTCTCTGCTAGATTTGCTGTCCCTTCGAATTCCTTTGCTACTTTATATTATTTTAAAGAAAAGAAAAAGGAAATCTTTTATACTTGTGCCAGTATTGGGTATCATTAG 1830 40.71 MSSANRHHLDFLRLLDSTAPDPKCNKNKSKTKIVHYGLSIPPFHLQQKTPLPIPIFIIFALIISVVSICCINQQTLFPCFSLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQVAAPVLLFFFAPFFSFVRILWHLLYHTLKILNERGRETSETFLHLSGIVILMDPKKPGDEEEGGLLSCWGNLKLKFPCNKGRRNTQTRHRRVGWKIMEAFKPKRPKPFSSFRYDPLSYAQNFDDGCWDEDCEGSSNRGFSARFAVPSNSFATLYYFKEKKKEIFYTCASIGYH* 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6387733 6394700 + Vvi18g549 Vvi18g549 780252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g549 609 SUPERFAMILY HCP-like 124 325 - -
Vvi18g549 609 TIGRFAM PPR: pentatricopeptide repeat domain 363 397 IPR002885 -
Vvi18g549 609 TIGRFAM PPR: pentatricopeptide repeat domain 153 187 IPR002885 -
Vvi18g549 609 TIGRFAM PPR: pentatricopeptide repeat domain 293 327 IPR002885 -
Vvi18g549 609 TIGRFAM PPR: pentatricopeptide repeat domain 258 290 IPR002885 -
Vvi18g549 609 TIGRFAM PPR: pentatricopeptide repeat domain 328 362 IPR002885 -
Vvi18g549 609 TIGRFAM PPR: pentatricopeptide repeat domain 118 152 IPR002885 -
Vvi18g549 609 TIGRFAM PPR: pentatricopeptide repeat domain 224 257 IPR002885 -
Vvi18g549 609 TIGRFAM PPR: pentatricopeptide repeat domain 188 221 IPR002885 -
Vvi18g549 609 PANTHER ATPASE EXPRESSION PROTEIN 3 87 439 - -
Vvi18g549 609 Gene3D Tetratricopeptide repeat domain 61 213 IPR011990 GO:0005515
Vvi18g549 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Vvi18g549 609 Gene3D Tetratricopeptide repeat domain 214 284 IPR011990 GO:0005515
Vvi18g549 609 Gene3D Tetratricopeptide repeat domain 355 425 IPR011990 GO:0005515
Vvi18g549 609 Gene3D Tetratricopeptide repeat domain 285 354 IPR011990 GO:0005515
Vvi18g549 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Vvi18g549 609 PANTHER OS02G0565400 PROTEIN 87 439 - -
Vvi18g549 609 Pfam PPR repeat 181 213 IPR002885 -
Vvi18g549 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Vvi18g549 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Vvi18g549 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Vvi18g549 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Vvi18g549 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Vvi18g549 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Vvi18g549 609 Pfam PPR repeat family 360 407 IPR002885 -
Vvi18g549 609 Pfam PPR repeat family 115 164 IPR002885 -
Vvi18g549 609 Pfam PPR repeat family 293 338 IPR002885 -
Vvi18g549 609 Pfam PPR repeat family 220 269 IPR002885 -
Vvi18g549 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g549 - - - vvi:100267729 695.656
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g549 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .