Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g553 ATGGCGCTTCGCGGACTCGCCTCTTCCGTCAAGAAGCCGATTGGGCCTCTTATCAATGGCGGTTCCCTTTACTACATGTCATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCTGACATCATTGAGCTCGAGAAAGCGAGGCAATGGAAGGGATTGGAACTCATTCCTTCAGAAAATTTCACATCGGTATCTGTAATGCAAGCCGTTGGATCAGTCATGACTAATAAATATAGTGAAGGGTATCCTGGTGCGAGATACTATGGAGGAAATGAGTATATTGACATGGCAGAGTCCTTATGTCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGGCATTATTAAAACCTCATGAGAGAATCATGGCACTTGATCTTCCTCATGGTGGGCATCTTTCACATGGTTATCAGACCGACACCAAGAAGATATCTGCTGTGTCTATATTTTTTGAGACAATGCCATACAGATTGGATGAAAAAACTGGATATATTGACTATGACCAGTTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAGGTGTGTGACAAGCAGAAAGCTGTCATGTTGGCAGACATGGCACATATTAGTGGGTTGGTTGCTGCTGGTGTTATCCAATCTCCTTTTGAATATGCTGATATTGTGACAACCACAACACATAAGTCTCTACGTGGGCCACGTGGAGCAATGATATTCTTCAGGAAGGGGGTTAAAGAGATCAACAAACAAGGGAAAGAAGTGTTGTATGACTATGAAGACAAAATCAATCAGGCTGTCTTTCCTGGACTTCAAGGTGGACCACACAATCATACTATTTCTGGCTTAGCAGTTGCATTGAAACAGGCCATGACTCCAGAGTACAAGGCTTATCAAGAGCAAGTCCTTACTAATTGCTCAACATTTGCTCAGAGTCTGTTAGAGAAAGGCTATGAACTTGTATCTGGCGGAACTGATAACCATTTAGTCTTGGTGAATTTGAAAAACAAGGGTATTGATGGTTCTAGAGTTGAAAAGGTTCTTGAATCAGTTCACATTGCAGCCAATAAAAACACTGTTCCTGGGGATGTGTCTGCCATGGTTCCTGGTGGCATTCGAATGGGAACCCCAGCTCTTACATCTAGGGGATTTGTTGAGGAGGATTTTGTGAAAGTAGCCGAGTTATTTGATGCTGCTGTCAAGTTGGCTTTGAAGATCAAAGCTAACAGCAAAGGAACAAAGTTGAAGGACTTTGTGGCAACCATGCAGTCAGATGCCGAAACTCAATCTGAGATTGCGAAGCTCCGCCATGAGGTCGAGGAGTATGCAAAACAATTCCCAACTATTGGTTTTGAGAAAGAAACAATGAAATATAAAGATTGA 1545 43.24 MALRGLASSVKKPIGPLINGGSLYYMSSLPNEVVCEKEKSRITWTKQLNAPLEVVDPEIADIIELEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFQLDPAKWGVNVQSLSGSPANFQAYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDEKTGYIDYDQLEKSAALFRPKLIVAGASAYARLYDYARIRKVCDKQKAVMLADMAHISGLVAAGVIQSPFEYADIVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDKINQAVFPGLQGGPHNHTISGLAVALKQAMTPEYKAYQEQVLTNCSTFAQSLLEKGYELVSGGTDNHLVLVNLKNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAELFDAAVKLALKIKANSKGTKLKDFVATMQSDAETQSEIAKLRHEVEEYAKQFPTIGFEKETMKYKD* 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6430670 6439022 + Vvi18g553 Vvi18g553 780256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g553 514 Pfam Serine hydroxymethyltransferase 52 448 IPR039429 -
Vvi18g553 514 Gene3D - 81 354 IPR015421 GO:0003824
Vvi18g553 514 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 3 513 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vvi18g553 514 CDD SHMT 55 476 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vvi18g553 514 PIRSF SHMT 34 509 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vvi18g553 514 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 3 513 - -
Vvi18g553 514 SUPERFAMILY PLP-dependent transferases 41 505 IPR015424 -
Vvi18g553 514 Hamap Serine hydroxymethyltransferase [glyA]. 51 504 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vvi18g553 514 Gene3D Aspartate Aminotransferase, domain 1 56 501 IPR015422 GO:0003824
Vvi18g553 514 Coils Coil 479 499 - -
Vvi18g553 514 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 275 291 IPR019798 GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g553 K00600 glyA, SHMT; glycine hydroxymethyltransferase [EC:2.1.2.1] - vvi:100245411 1018.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g553 Blo01g01790 . . . . . . . . . . . . . Sed07g1476 . . Bhi04g00909 Tan02g2503 . . Hepe10g0407 . Lcy13g1458 Cla08g01180 Cam08g1645 Cec08g1219 Cco08g1340 Clacu08g1340 . Cre08g1126 . . . . . . . Cme03g01782 . Blo18g00098 . . . . Bma01g01367 . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01041 Csa02g02227 Chy03g01290 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000166 7 6 6 5 4 5 6 5 6 7 6 6 9 6 5 10 6 8 7 6 5 5 6 5 5 6 5 19 9 4 195