Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g554 ATGGCGTCTCTGCCTTCTGTTGCTGTTACCCGCACTCCCAAGAGCGAATCTGAATTCCGAAAATATTCCGCCAGTTTTCTTCCCAGCGAAAAGAGCCCGAGTGTCTCTTATCAGCGAAGCACCCAATTAGATGGAGTTTCAGAGGCAAGGTGTCTGGACTTCCGAGAAGCGCTCTCTTTTATAAGAGAAGGCACGAAGGTGGAGTCAGCTTTTTACGTACCCATCTTGCAAGAATGCATCGACAAGAAATTGACTGCTCGAAAGGTTTTTGACGAATTGCCTCGCAGAAACGTGGTTTCATGGACGACCCTGATGACGGGTTACGTTCACGATTCAAAGCCGGAGTTGGCTGTCCAAGTCTTTCGAGAAATGCTGGAAGCAGGAGCTTATCCCACCAACTACACTTTGGGAACTGCTTTGAGTGCTTCTTCTGATTTGCACTCTAAAGAATTAGGGAAGCAAATCCATGGTTATAGTATTAAATACAGGATTGAATTCGACGCTAGCATTGGCAACTCCCTTTGTAGCTTGTACTCAAAATGCGGCAGCTTGGAATGTGCCGTTAAAGCTTTCAGGAGGATAAGGGATAAGAATGTGATTTCATGGACTACAGTTATATCTGCTTGGGGCGATAATGGTGAAGCTGCAACTGGTCTGCAATTTTTCGTTGAGATGCTTTCCGAGTGTGTTGAGCCCAATGAGTTCACACTGACCAGTGCCTTGAGCTTGTGTTGTGTAATGCAGAGTTTGGACATTGGGACGCAGATCCATTCACTGACCATTAAACTTGGGTTTGAATCAAATCTACCCATAAAGAATTCTATCATGTATTTGTACCTCAAATGTGGGTGGATCCATGAAGCCAAGAAATTGTTTGATGAGATGGAAACTATCAGCTTGGTCACCTGGAATGCGATGATTGCAGGGCATGCCAGGATGATGGATTTTGCAAAGGATGACCTTGCAGCACACCAGTGCGGAACTGAGGCACTTAGCATTTTCCTGAAATTGAATCGGTCTGGTATGAAACCTGATCTGTTCACCTTCTCAAGTGTCTTATCTGTGTGCAGCAGTTTGGTGGCCTTAGAACAAGGAGAACAAGTTCATGCTCAAACCATCAAAACCGGGTTTTTGTCAGATGTGGTTAATGGCCAGCCTCAGCAAGCATTGCTGCTGTTTGAGGATATGAGATTAGCAGGAGTTAGACCAAACAAGATTACCTTTGTAGGTGTTCTTTCAGCTTGTAGTCATGCTGGAATGGTTGATGAAGCATTGGATTACTTTCAGATGATGAAAAATGAGTACAAAATCACTCCTGTGATGGACCATTATGCATGCCTAATCGATATGTTTGTTAGGTTGGGTCGGTTAGACGAAGCTTTTGATTTCATAAAAGAGATGGATTTGGAGCCCAATGAGTTTATATGGTCGATCTTGATTGCAGGCTGTAGAAGTCAAGGGAAATTGGAGTTAGGGTTTTATGCGGCAGAACAGTTACTCAACCTGAAGCCAAAAGATACAGAGACCTACAACCTTTTGTTGAACATGTACCTTTCAGCAGGGAAATGGAAGGAAGTTTCAAGGGTGAGAAAAATGATGAAAGAAGAGAAACTTGGAAGATTAAAGGATTGGAGCTGGATTAGCATCAAGGACAAGATTTATTCATTCAAACGCAATGCCCGGTCACATGCACAGAGTGGGGAGATGTATGAATTGTTGGGGAACTTGCATGAGAAAGCAAAGAGTTTTGGATATGAATGGGAAGAAAGCTTAGAGGTGACCGATGAGGAGGAAGATGCTGATGAGGAGAAGGCATTAACTTCCATTGTTTATCACAGTGAAAAATTGGCTATTGCATTTGGGCTGTTGAACACATCAAATGCTGTACCAATACGGGTTACGAAGAGTATTAGCATGTGCAGGGATTGCCACAATTTTATTAGGATCATCTCGTTGCTGTCTGCTCGGGAAATCATCATTCGGGATAGCAAGCGGCTTCACAAATTCATCAACGGACACTGTTCATGTGGAGATTTTGGAACTCTAATCTGA 2052 43.47 MASLPSVAVTRTPKSESEFRKYSASFLPSEKSPSVSYQRSTQLDGVSEARCLDFREALSFIREGTKVESAFYVPILQECIDKKLTARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDVVNGQPQQALLLFEDMRLAGVRPNKITFVGVLSACSHAGMVDEALDYFQMMKNEYKITPVMDHYACLIDMFVRLGRLDEAFDFIKEMDLEPNEFIWSILIAGCRSQGKLELGFYAAEQLLNLKPKDTETYNLLLNMYLSAGKWKEVSRVRKMMKEEKLGRLKDWSWISIKDKIYSFKRNARSHAQSGEMYELLGNLHEKAKSFGYEWEESLEVTDEEEDADEEKALTSIVYHSEKLAIAFGLLNTSNAVPIRVTKSISMCRDCHNFIRIISLLSAREIIIRDSKRLHKFINGHCSCGDFGTLI* 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6439225 6441781 - Vvi18g554 Vvi18g554 780257

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g554 683 Pfam E motif 489 547 IPR046848 -
Vvi18g554 683 TIGRFAM PPR: pentatricopeptide repeat domain 200 234 IPR002885 -
Vvi18g554 683 TIGRFAM PPR: pentatricopeptide repeat domain 444 467 IPR002885 -
Vvi18g554 683 TIGRFAM PPR: pentatricopeptide repeat domain 99 132 IPR002885 -
Vvi18g554 683 TIGRFAM PPR: pentatricopeptide repeat domain 406 434 IPR002885 -
Vvi18g554 683 TIGRFAM PPR: pentatricopeptide repeat domain 509 537 IPR002885 -
Vvi18g554 683 TIGRFAM PPR: pentatricopeptide repeat domain 273 296 IPR002885 -
Vvi18g554 683 SUPERFAMILY TPR-like 418 523 IPR011990 GO:0005515
Vvi18g554 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 434 IPR002885 -
Vvi18g554 683 Pfam PPR repeat family 96 139 IPR002885 -
Vvi18g554 683 PANTHER OS01G0913400 PROTEIN-RELATED 384 618 - -
Vvi18g554 683 PANTHER OS01G0913400 PROTEIN-RELATED 71 382 - -
Vvi18g554 683 Pfam DYW family of nucleic acid deaminases 599 679 IPR032867 GO:0008270
Vvi18g554 683 Pfam Pentacotripeptide-repeat region of PRORP 327 476 IPR033443 -
Vvi18g554 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Vvi18g554 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Vvi18g554 683 Gene3D Tetratricopeptide repeat domain 49 154 IPR011990 GO:0005515
Vvi18g554 683 Gene3D Tetratricopeptide repeat domain 155 255 IPR011990 GO:0005515
Vvi18g554 683 Gene3D Tetratricopeptide repeat domain 256 375 IPR011990 GO:0005515
Vvi18g554 683 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 384 618 - -
Vvi18g554 683 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 71 382 - -
Vvi18g554 683 Gene3D Tetratricopeptide repeat domain 378 505 IPR011990 GO:0005515
Vvi18g554 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Vvi18g554 683 Pfam PPR repeat 200 228 IPR002885 -
Vvi18g554 683 Pfam PPR repeat 273 296 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g554 - - - vvi:100252407 1291.56
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g554 . . Bda01g00921 . . . . . . . . . . . . . . Bhi04g00908 . . . . . Lcy13g1457 Cla08g01181 . . . . . . . . Cone17ag1161 . . . . . . . . . Bpe02g01166 . Bma01g01366 . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01042 Csa02g02228 Chy03g01289 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010527 1 1 1 1 1 1 2 1 1 1 1 1 2 0 0 2 1 1 2 1 1 0 1 1 0 1 1 0 1 1 29