Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g555 ATGGTGGCGGTGCGGAAGGTTGGCAAGTATGAGGTGGGGAGGACGATCGGAGAAGGGACCTTCGCTAAGGTAAAGTTCGCGCAGAACACGGAGACCGGTGAGAGTGTGGCCATGAAAGTGCTCGATCGCAGCACCATCATCAAGCACAAGATGACCGACCAGATTAAGAGGGAGATATCTATAATGAAGCTTGTTAGACATCCATATGTTGTTCGTCTTCATGAGGTTCTAGCAAGCCGTACAAAAATATATATAATCTTGGAGTTCATCACAGGTGGCGAGTTGTTTGATAAAATAGTTCACCATGGCCGACTAAGTGAAAATGAATCTAGAAGTTACTTCCAACAGCTCATTGACGGTGTGGATTATTGCCACAGTAAGGGAGTCTACCACAGAGACTTAAAGCCTGAAAACCTTCTACTAGATTCCCAAGGAAATCTAAAGATTTCAGATTTTGGTCTCAGTGCGTTGCCTGCGCCGGGAGTTAGCCTCCTTAAGACAACTTGTGGTACTCCTAACTATGTAGCACCAGAGGTACTCAGTCACAAGGGTTATGATGGTGCTGTAGCAGATGTCTGGTCTTGTGGTGTCATCCTTTATGTTCTGATGGCTGGATATCTCCCGTTTGATGAGCTTGATTTAACCACTCTGTACAACATTATATTTAGATATGGCCTTATCGAGAGAGCAGAATTTTCATGCCCATCCTGGTTTCCAGTGGGAGCAAAATCCTTGATTCATAGAATTTTAGACCCAAATCCTGAAACTCGCATTCGAATTGAACAGATCAGGAGCGATGAGTGGTTTAGAAAGGGGTATGTTCCAGTCCGACTTCTTGAATATGAAGATGTTAACCTGGATGATGTAAACGCTGTGTTTGATGATCCTGAGGAACAACATGCTAATGATCAACATGGAAATGAGGACATGGGTCCTCTGATTCTTAATGCATTTGACCTAATAATTCTTTCTCAGGGCCTAAACCTTTCAGCTCTGTTTGAACGGGGAGAGGGCCCTGTAAAGCATCAAACACGTTTCGTTTCACAGAAACCACCAAGAGTTGTTCTATCAAGCATGGAAGTTGTTGCACAATCCATGGGTTTCAAGACACATATTCGCAATTATAAGATGAGGGTGGAAGGCATTTCAGCCAATAAGATGGAACATTTCTCAGTCATGTTGGAAATTTTTGAAGTTGCTCCCACATTTATTATGGTAGACATTCAGAAAGCAGCTGGAGATGCTGGTGAATACCAGAAGTTTTACAAGAACTTCTGCAGCAATCTGGAGGATATCATCTGGAAACCACTCAATGAATCAAGCAAATCAAGGATCACCAAGACGAAGAGTAAAAAGGGTTGA 1362 43.1 MVAVRKVGKYEVGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMTDQIKREISIMKLVRHPYVVRLHEVLASRTKIYIILEFITGGELFDKIVHHGRLSENESRSYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSQGNLKISDFGLSALPAPGVSLLKTTCGTPNYVAPEVLSHKGYDGAVADVWSCGVILYVLMAGYLPFDELDLTTLYNIIFRYGLIERAEFSCPSWFPVGAKSLIHRILDPNPETRIRIEQIRSDEWFRKGYVPVRLLEYEDVNLDDVNAVFDDPEEQHANDQHGNEDMGPLILNAFDLIILSQGLNLSALFERGEGPVKHQTRFVSQKPPRVVLSSMEVVAQSMGFKTHIRNYKMRVEGISANKMEHFSVMLEIFEVAPTFIMVDIQKAAGDAGEYQKFYKNFCSNLEDIIWKPLNESSKSRITKTKSKKG* 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6442872 6452788 - Vvi18g555 Vvi18g555 780258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g555 453 SUPERFAMILY Protein kinase-like (PK-like) 7 286 IPR011009 -
Vvi18g555 453 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 3 450 - -
Vvi18g555 453 SMART serkin_6 10 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g555 453 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165
Vvi18g555 453 Pfam NAF domain 312 370 IPR004041 GO:0007165
Vvi18g555 453 ProSitePatterns Protein kinases ATP-binding region signature. 16 48 IPR017441 GO:0005524
Vvi18g555 453 ProSiteProfiles Protein kinase domain profile. 10 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g555 453 CDD CIPK_C 316 431 - -
Vvi18g555 453 Gene3D Kinase associated domain 1, KA1 311 435 - -
Vvi18g555 453 PANTHER - 3 450 - -
Vvi18g555 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vvi18g555 453 Gene3D Transferase(Phosphotransferase) domain 1 3 310 - -
Vvi18g555 453 Pfam Protein kinase domain 10 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76377 PF00069 Pkinase 6.60E-72 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g555 - - vri:117907383 860.136