Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g558 ATGACGTTTTCTACCCCCTTTCCCCCCTCATTAATACCGACTCCCATTTTCAAGCCCGCCACAACCGCTGCGTCACCCTCCTCCTACTCCCCGCTTCTCCCCCAAATTCGTCCCTCTTCCTCTGTTCTTCGTTGTTCCTCCATCTCTGATATGGATGCAACTGCAGGTCAAGGTCTTTACCCTTTGCACCGTTGTAAAACAATTCACTTGGTGAGGCATGCTCAAGGGATTCACAATGTAGAAGGAGAAAAGGATCATAGTGCATACTTATCCCAGGAACTATTTGATGCACATCTTACCCCGCTCGGTTGGCAGCAGGTTGATAATCTGCACAAGCATGTTCAGGCATGTGGGCTTTCGAAGAAGGTTGAACTAGTTGTTGTTTCCCCTTTGCTGAGGACCATGCAAACAGCAGCTGGAGTTTTTGGTGGCGAAAGCTACAAAGATGGGATAGATGTAACTCCATTAATGGTGGCAAATGTTGGGAACAGTGAACGACCTGCAATTTCAAGTCTAAATCGCCCGCCATTTCTAGCATTAGAGCTTTGTCGAGAACATTTGGGAGTTCACCCATGTGACAAGAGGAGAAGCATTCATGAGTATCGGCCTCTTTTTCCTGCAATTGATTTTTCACTGATAGAAAGTGATGATGATGTTTTGTGGACGGCGGATGTTCGAGAGAAGAACGAAGATGTCGCTTCTAGGGGAATGAAGTTTATGAATTGGCTTTGTACTCGGAAAGAGAAGGAGATAGCAGTTGTTTCTCATAGTGGGTTCTTGTTTCATGCTTTAAGTGCGTTTGGGAATGATTGTCATCCATTGGTGAAGAGTGAGATATGCAAACACTTTGCCAACTGTGAACTTCGTTCAATGGTCATAGTTGATAGGGGTATGATAGGGTCAGATTCCTCAACGACTAACTATCCTGGAAAAATCCCTCATGGGCTTGATCTACCAAGTGATGTTGCAAATGACAAGCACCCAAAAGAGAAGGGAGTTCCTAATTAG 1008 45.14 MTFSTPFPPSLIPTPIFKPATTAASPSSYSPLLPQIRPSSSVLRCSSISDMDATAGQGLYPLHRCKTIHLVRHAQGIHNVEGEKDHSAYLSQELFDAHLTPLGWQQVDNLHKHVQACGLSKKVELVVVSPLLRTMQTAAGVFGGESYKDGIDVTPLMVANVGNSERPAISSLNRPPFLALELCREHLGVHPCDKRRSIHEYRPLFPAIDFSLIESDDDVLWTADVREKNEDVASRGMKFMNWLCTRKEKEIAVVSHSGFLFHALSAFGNDCHPLVKSEICKHFANCELRSMVIVDRGMIGSDSSTTNYPGKIPHGLDLPSDVANDKHPKEKGVPN* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6487455 6491941 - Vvi18g558 Vvi18g558 780261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g558 335 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 48 323 - -
Vvi18g558 335 SUPERFAMILY Phosphoglycerate mutase-like 66 296 IPR029033 -
Vvi18g558 335 Gene3D - 65 312 IPR029033 -
Vvi18g558 335 SMART PGAM_5 67 263 IPR013078 -
Vvi18g558 335 Pfam Histidine phosphatase superfamily (branch 1) 68 141 IPR013078 -
Vvi18g558 335 PANTHER PHOSPHOGLYCERATE MUTASE FAMILY PROTEIN 48 323 - -
Vvi18g558 335 CDD HP_PGM_like 67 141 IPR013078 -
Vvi18g558 335 MobiDBLite consensus disorder prediction 304 335 - -
Vvi18g558 335 MobiDBLite consensus disorder prediction 320 335 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g558 - - - vvi:100265997 682.559
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g558 . . . . Bpe02g00151 . . Bma01g02575 . . . Cma09g00605 . . . Cpe06g00466 . . . . . . . . . . . . . . . Cone4ag1277 Cone7ag0874 . . Lsi04g02298 Csa03g04517 Chy04g00186 . . . Bda11g00812 . . Bpe05g00448 . . Sed05g1536 . Cmo09g00593 . . . Car09g00537 . . Bhi09g02533 Tan01g3880 Cmetu04g2852 . Hepe01g2188 Mch11g0734 . Cla11g01447 Cam11g1500 Cec11g1537 Cco11g1533 Clacu11g1664 Cmu11g1480 Cre11g1900 . . . Cme04g00216
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000410 2 5 1 2 2 0 4 4 2 4 2 4 4 4 4 4 4 4 3 4 4 3 3 3 3 2 5 16 9 2 113