Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g559 | ATGGAGGTGAATGAACATGGCTTCTTGGAGGAGTTACTGGCTCTAAGAGGAGACCCTTGGGAAACCATTCCTACGGGAATGAATGAGTTCTTCTCACATGGCTGGGGTTTTGATTATCGTTTTGATGAAAACCCAGTTACCGATTCCTCCTACACCAAGCAAGATACACCCCCATTTCCAACTCAAGAAGATTATCCATTTCCGATGATGGAGGAGGAGGAACCTGCAGTTCACCCTGGGGTCGATCTCCACAACATGGGGCTTCAAGCTACTTGTAAAGTGGAGCCAATTCAATCCACTGAATTTCCAGTTTTCAACGTGGGCGTATGTAACGAGGTAAAGAATAAGCGGACCAAGAAGGTGGAAGGGCAACCTTCCAAGAATCTAATGGCTGAGAGAAGGCGCAGGAAGCGATTGAATGACCGGCTTTCAATGCTAAGATCTGTTGTTCCCAAAATTAGCAAGATGGACAGGACATCTATACTTGGAGATACCATAGATTACATGAAAGAGCTATTAGAGAGAATCAACAATCTGCAGGAAGAAAATGAAGTGGACTCCAGTCAGTTGAACTTGCTGGGCATATTCAAGGACTTAAAACCAAATGAAATCATGGTCAGAAATTCGCCTAAGTTTGATGTGGAAAGAAGAAACATGGATACCCGGATAGAAATTTGCTGTGCAGGGAAGCCAGGATTGTTACTATCTACAGTAAATACCCTGGAAGCATTAGGACTTGAGATTCAACAGTGTGTTATTAGTTGTTTCAATGATTTCTCAATGCAAGCTTCTTGCTCAGAGGAATTGGAGAAGAGAACAATGGTAAGTTCTGAGGAACTAAAGCAAACATTATTTAGAAATGCAGGGTATGGAGGAAGGTGTCTGTAG | 888 | 42.91 | MEVNEHGFLEELLALRGDPWETIPTGMNEFFSHGWGFDYRFDENPVTDSSYTKQDTPPFPTQEDYPFPMMEEEEPAVHPGVDLHNMGLQATCKVEPIQSTEFPVFNVGVCNEVKNKRTKKVEGQPSKNLMAERRRRKRLNDRLSMLRSVVPKISKMDRTSILGDTIDYMKELLERINNLQEENEVDSSQLNLLGIFKDLKPNEIMVRNSPKFDVERRNMDTRIEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEELEKRTMVSSEELKQTLFRNAGYGGRCL* | 296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 6502784 | 6504375 | + | Vvi18g559 | Vvi18g559 | 780262 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g559 | 295 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 2 | 43 | - | - | |
Vvi18g559 | 295 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 46 | 295 | - | - | |
Vvi18g559 | 295 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 123 | 172 | IPR011598 | GO:0046983 | |
Vvi18g559 | 295 | PANTHER | - | 46 | 295 | - | - | |
Vvi18g559 | 295 | PANTHER | - | 2 | 43 | - | - | |
Vvi18g559 | 295 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 126 | 191 | IPR036638 | GO:0046983 | |
Vvi18g559 | 295 | Coils | Coil | 162 | 189 | - | - | |
Vvi18g559 | 295 | MobiDBLite | consensus disorder prediction | 118 | 137 | - | - | |
Vvi18g559 | 295 | CDD | ACT_UUR-ACR-like | 221 | 262 | - | - | |
Vvi18g559 | 295 | SMART | finulus | 129 | 178 | IPR011598 | GO:0046983 | |
Vvi18g559 | 295 | Pfam | Helix-loop-helix DNA-binding domain | 129 | 172 | IPR011598 | GO:0046983 | |
Vvi18g559 | 295 | Gene3D | - | 131 | 199 | IPR036638 | GO:0046983 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14340 | PF00010 | HLH | 1.20E-09 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g559 | - | - | vvi:100250635 | 580.096 |