Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g559 ATGGAGGTGAATGAACATGGCTTCTTGGAGGAGTTACTGGCTCTAAGAGGAGACCCTTGGGAAACCATTCCTACGGGAATGAATGAGTTCTTCTCACATGGCTGGGGTTTTGATTATCGTTTTGATGAAAACCCAGTTACCGATTCCTCCTACACCAAGCAAGATACACCCCCATTTCCAACTCAAGAAGATTATCCATTTCCGATGATGGAGGAGGAGGAACCTGCAGTTCACCCTGGGGTCGATCTCCACAACATGGGGCTTCAAGCTACTTGTAAAGTGGAGCCAATTCAATCCACTGAATTTCCAGTTTTCAACGTGGGCGTATGTAACGAGGTAAAGAATAAGCGGACCAAGAAGGTGGAAGGGCAACCTTCCAAGAATCTAATGGCTGAGAGAAGGCGCAGGAAGCGATTGAATGACCGGCTTTCAATGCTAAGATCTGTTGTTCCCAAAATTAGCAAGATGGACAGGACATCTATACTTGGAGATACCATAGATTACATGAAAGAGCTATTAGAGAGAATCAACAATCTGCAGGAAGAAAATGAAGTGGACTCCAGTCAGTTGAACTTGCTGGGCATATTCAAGGACTTAAAACCAAATGAAATCATGGTCAGAAATTCGCCTAAGTTTGATGTGGAAAGAAGAAACATGGATACCCGGATAGAAATTTGCTGTGCAGGGAAGCCAGGATTGTTACTATCTACAGTAAATACCCTGGAAGCATTAGGACTTGAGATTCAACAGTGTGTTATTAGTTGTTTCAATGATTTCTCAATGCAAGCTTCTTGCTCAGAGGAATTGGAGAAGAGAACAATGGTAAGTTCTGAGGAACTAAAGCAAACATTATTTAGAAATGCAGGGTATGGAGGAAGGTGTCTGTAG 888 42.91 MEVNEHGFLEELLALRGDPWETIPTGMNEFFSHGWGFDYRFDENPVTDSSYTKQDTPPFPTQEDYPFPMMEEEEPAVHPGVDLHNMGLQATCKVEPIQSTEFPVFNVGVCNEVKNKRTKKVEGQPSKNLMAERRRRKRLNDRLSMLRSVVPKISKMDRTSILGDTIDYMKELLERINNLQEENEVDSSQLNLLGIFKDLKPNEIMVRNSPKFDVERRNMDTRIEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEELEKRTMVSSEELKQTLFRNAGYGGRCL* 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6502784 6504375 + Vvi18g559 Vvi18g559 780262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g559 295 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 43 - -
Vvi18g559 295 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 46 295 - -
Vvi18g559 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
Vvi18g559 295 PANTHER - 46 295 - -
Vvi18g559 295 PANTHER - 2 43 - -
Vvi18g559 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 191 IPR036638 GO:0046983
Vvi18g559 295 Coils Coil 162 189 - -
Vvi18g559 295 MobiDBLite consensus disorder prediction 118 137 - -
Vvi18g559 295 CDD ACT_UUR-ACR-like 221 262 - -
Vvi18g559 295 SMART finulus 129 178 IPR011598 GO:0046983
Vvi18g559 295 Pfam Helix-loop-helix DNA-binding domain 129 172 IPR011598 GO:0046983
Vvi18g559 295 Gene3D - 131 199 IPR036638 GO:0046983
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14340 PF00010 HLH 1.20E-09 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g559 - - vvi:100250635 580.096