Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g56 ATGCAGAAGCTGAGCTGTTTGTTCTCTGTCGAAGTTGTCACTGTCCAAGGACTTCCAGCTTCTATGAACGGACTCCGGCTTTCAGTTTGTGTTAGGAAGAAGGAAACCAAGGAAGGCGCAGTTCACACAATGCCATCAAGAGTTTCACAGGGAGCAGCTGATTTTGAAGAGACTATGTTTCTTAAGTGTCATGTTTACTGCAGTTATGACAGTGGAAAACAGCAAAAATTTGAGCCACGACCATTTTTGATCTATGTGTTTGCAGTTGATGCTCAAGAGCTTGATTTTGGAAGAAGTTTGGTGGATTTGAGTCTCCTTATTCAGGAGTCCATAGAGAAAAGCGCTGAAGGTACACGAGTTCGACAATGGGACATGAGCTTCAATCTATCAGGGAAAGCAAAAGGAGGAGAACTTGTTCTGAAATTGGGATTTCAGATTATGGAGAAAGATGGGGGGGTTGGAATTTATAGTCAGTCTGAGGGATTGAAGTCCGGTAAATCTATGAATTTCGCATCCTCTTTTGGCCGTAAGCAGTCGAAATCATCCTTTAGCATCCCCAGTCCAAGGATGTCAAGCCGATCAGAAACTTGGACTCCTTCACAGGGAGGAGCAACTGGAGATCTCCAAGGTATTGATGACTTGAATCTTGATGAACCTGCTCCAGTGCCTTCAACCTCTCCCTCTATTCAAAAGTCAGAAGAAACTGAATCAAAGATAGAAGATCTAGACGTTCTGGATTTTGATGTTGTGGACAAAGGAGTTGTGAAGGAAGTTGTGCATGATCAGGTCCATCTTACAAGATTAACTGAGCTTGATTCCATTGCTCAGCAGATAAAAGCTCTTGAATCAATGATGGGGGGAGAAAAACTCAACAAAACAGAGGAAGAAACAGATGTGCCGAGACTGGATGCAGACGAAGAAACAGTGACTAGAGAATTTCTTCAGATGCTAGAGGCTGAAGATGATAGTGAATTGAGATTCAATCAATCTGATATCCCACCTCTAAAGCTGGAAGGAAACTCAGCTCAGAAATTTTATCTTCAATGCCCCTTGATGAACTTATAG 1065 42.54 MQKLSCLFSVEVVTVQGLPASMNGLRLSVCVRKKETKEGAVHTMPSRVSQGAADFEETMFLKCHVYCSYDSGKQQKFEPRPFLIYVFAVDAQELDFGRSLVDLSLLIQESIEKSAEGTRVRQWDMSFNLSGKAKGGELVLKLGFQIMEKDGGVGIYSQSEGLKSGKSMNFASSFGRKQSKSSFSIPSPRMSSRSETWTPSQGGATGDLQGIDDLNLDEPAPVPSTSPSIQKSEETESKIEDLDVLDFDVVDKGVVKEVVHDQVHLTRLTELDSIAQQIKALESMMGGEKLNKTEEETDVPRLDADEETVTREFLQMLEAEDDSELRFNQSDIPPLKLEGNSAQKFYLQCPLMNL* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 599935 601322 + Vvi18g56 Vvi18g56 779759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g56 354 ProSiteProfiles C2 NT-type domain profile. 1 148 IPR019448 -
Vvi18g56 354 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 254 342 IPR039614 -
Vvi18g56 354 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 1 254 IPR039614 -
Vvi18g56 354 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1 1 254 IPR033343 GO:0009902
Vvi18g56 354 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1 254 342 IPR033343 GO:0009902
Vvi18g56 354 MobiDBLite consensus disorder prediction 178 205 - -
Vvi18g56 354 MobiDBLite consensus disorder prediction 178 237 - -
Vvi18g56 354 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 2 149 IPR019448 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g56 - - - vvi:100244427 617.461
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g56 . . . . . . . . . . Cma01g02033 Cma09g00032 Car01g01601 . . Cpe06g00007 . . . . . . . . . . . . . . . . . . . . Csa04g02729 . . . Blo18g00735 . Bda01g01571 Bpe02g01765 . . . Sed12g2182 Cmo01g02088 Cmo09g00033 . . . Car09g00027 . Cpe02g00020 Bhi09g02837 Tan01g5147 Cmetu07g1999 . . Mch11g0039 . Cla11g01842 Cam11g1910 Cec11g1935 Cco11g1947 Clacu11g2073 Cmu11g1879 Cre11g2287 . . Chy07g00415 Cme07g00034
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007845 1 1 1 0 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 1 1 1 29