Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g566 ATGTTTGTCATCCAAAGTCATTGCTCTGAGAGTAATGTTGAGCATGTCCAAATGATTATGAGAGTTCTCTATATAGGTTTTTCCTTATTGCTCTCCATATACATTTTTTTCTGGGAAATTTTGTGTTATATTTTCAATTTTTGGGGATGGTTTGTTTCTTCAAATGCTATGGGCTTTCTTGCGGCCATAGCAAGGAAGAGGCCTCACCACTACAACACGGTTCTTTCTGCATTGCTTGATTTTGATTCAAGCATTGAGATGGTGAAAGGTCATTCTGCTAGCGTCCAGTATTCCCTGAGGACTGCCTTTTTAGGATTCCTAAGGTGTACTTGTCCAACTATAATGGAGTCAAGAGATAGATTACTTAGAGCACTACGTTCAATGAATGCTGGGGATGCAGCCGATCAAGTTATTCGGCAAGTTGATAAAATGATGAAGAATAATGAGCGTGCTTCACGTGATGCTCGGTTGGGCAGGGATGATCCACCATCAAGTCAGCTGTCTGTTCCTGGAGATCTGTTTAGGAAGAGGTCTATGCATCAGGATAATGAAGAGCCAACTAATGGTCATGGGATGACTTCCAAACGAATTCGTTATGGTCACAACATGCACTCAGCTTCACATGTTCAAATGAGTGATTCTGGGCAGGACTCTACTGCTGCTCCAACAATTACAATGCAGTCTTCAGTTCTCCCAGCACAAGTGCCTTTTTCTACAGCAGCTGCAACAAGCATGGCACATTCTGAAATGTCTACTGTCATTAATCTCCCTCCAGATTCTAAGCGCGATCCACGGAGGGATCCTCGTCGGCTGGATCCACGGCGTGTTGGAGTGCCGGTTGGACTACAATCTGTACATATGGTGGAGGATACTGGAGCTATTCAAGCTGAGTTTGATGGTTCTATTTCTTTGAGCAAGCCGCCTTCACTTCCTGTTGTCACAAGTGTAGAAAATACTTCCACATCTTTGGTGTCCAAAACTGAAGGTGATGATAAAATTTTAAAAAATGCATTGATTTCTGAAACTGATCAACCAATTTCCAGAGAGGAGCTTCTGGATGGAGCCAAGGAAGTTGATCATATTCCAGAGATTGGTGCTACTTCAGATGCTGCCCTTTCTCCTGCTCGCACAATTGATGAAGACTCGGCTGCACCAGAGTCATTGGATATTGCAGTGGCAGATGGAGCTGATACATCGCCTTTGATAGAAACTGATCAACATTCTCCAGCACGGTCAAATACTTATGTGTCTGAAGAGACCAGCATTGATTTACCTTTGCCTCCACCATATGTTGAGCTGACTGAAGATCAGAAAATTAGATTGAAAAAGTTGGCACTTGAACGGATTATCGATTCGTACGTGTATTCACGGGAAACAGATTGTAGCCATACACGCATGGCATTACTTGCTCGATTGGTTGCTCAGATTGATGGTGATGAGGATGTGGTTGTGATGCTGCAAAAACATGTTCTTTTGGATTACCAGGGCCAAAAGGGGCATGAACTTGTACTGCACATCCTGTACCACCTGCATGCGCTCATGATCTCAGATTCAGTTGAACACTCTTCATTTGCTGCTGTTGTATATGAAAAATTTCTTCTTGCAGTGGTAAAATCTCTGCTGGAAAAATTACCTGCTTCAGACAAGTCTTTTAGTAAACTGCTCGGTGAAGTTCCTCTTTTGCCCGATTCTGCCTTGAAATTGTTAGATGATCTCTGCTCTTCTGATGTTACTGATCAGCATGGAAAAGTTCTTCGCGACAGGGAGCGTGTCACTCAGGGCCTTGGTGCAGTATGGAGTTTGATTTTGGGCCGCCCACTTAATAGGCAAGCTTGCTTGAATATTGCTTTGAAGTGTGCTGTTCATTCACAAGATGACATTCGAACAAAAGCCATCCGACTGGTGGCAAACAAACTTTATCTTCTTAGCTATATATCAGAAAATATTCAGCAATATGCAACAGATATGTTGTTGTCAGCTGTTAATCAGCATATTTCAGATCCAGAGCTCTCACAATCTGGTTCCAGTGATCAAAGATTAGAAGCGGAGACTGGAAGCCTGGAGACATCAGTTAGTGGTTCTCAAATTTCTGAGCCTGGAACATCTGAAAATGACCCCATGAAGGGTTCACAATCTGTTCAGAACATCTCGACAGTGGAATTTCATCAAGCTCAACGCCTTATTTCTTTGTTTTTTGCTTTATGTACAAAGAAACCTAATCTTCTTCAACTTGTATTCAATATTTATGGGCGTGCTCCTAAGGCTGTTAAGCAGGCAATCCATCGTCATATCCCAATTATTATAGGGGCTCTAGGGCCATTATATCCCGAATTGCTCAGTATAATATCAGATCCACCAGAAGGAAGTGAAAATCTGCTGACACAGGTGCTGAAAATATTAACTGAAGAGAAGACGCCAACCCCACACCTGATTGCAATTGTTAAGCATTTGTATGAAACTAAATTAAAGGACGCCACAATTCTTATCCCAATGCTGTCCTTGCTGTCAAGAAATGAGGTTTTACCTATTTTTCCTCGGCTCATTGACCTTCCATTGGACAAATTTCAGGATGCACTTGCCAATATACTACAGGGTTCAGCTCATACAGGTCCAGCATTGACGCCTGCAGAAGTGTTGGTTGCTATCCATGACATTAGTCCTGAGAAAGATGGCATTGCACTCAAAAAGATAACAGAAGCTTGCTCTGCTTGTTTTGAGCAACGTACGGTTTTCACACCACAGGTTTTGGCAAAGGCCTTGAACCAGATGGTTGATCATACTCCATTGCCTCTACTCTTCATGAGAACAGTAATTCAGGCAATTGATGCTTATCCTACCCTGGTTGATTTTGTAATGGAGATACTTTCCAAGCTTGTGAGTAAACAGGTGTGGAGAATGCCAAAGTTGTGGGTCGGGTTCTTGAAATGTGTGTCTCAGACACAGCCACATTCTTTCCGTGTACTGTTACAGCTACCAGCTCCACAGCTTGAAAGTGCTCTGAACAAACATGCTAACCTCAGAGGTCCTCTTTCTGCTTATGCTAGCCAACCAAGTATAAAATCATCATTGCCTAGATCAATTCTCATAGTTCTTGGTCTGGTAAATGAACCCCACATGCAGCAATCACACCCTCCATCGTCTCTGCATTCATCAGACACAAGTTCTTCTGTTCATGGAGCAACTCTAACTTGA 3192 42.64 MFVIQSHCSESNVEHVQMIMRVLYIGFSLLLSIYIFFWEILCYIFNFWGWFVSSNAMGFLAAIARKRPHHYNTVLSALLDFDSSIEMVKGHSASVQYSLRTAFLGFLRCTCPTIMESRDRLLRALRSMNAGDAADQVIRQVDKMMKNNERASRDARLGRDDPPSSQLSVPGDLFRKRSMHQDNEEPTNGHGMTSKRIRYGHNMHSASHVQMSDSGQDSTAAPTITMQSSVLPAQVPFSTAAATSMAHSEMSTVINLPPDSKRDPRRDPRRLDPRRVGVPVGLQSVHMVEDTGAIQAEFDGSISLSKPPSLPVVTSVENTSTSLVSKTEGDDKILKNALISETDQPISREELLDGAKEVDHIPEIGATSDAALSPARTIDEDSAAPESLDIAVADGADTSPLIETDQHSPARSNTYVSEETSIDLPLPPPYVELTEDQKIRLKKLALERIIDSYVYSRETDCSHTRMALLARLVAQIDGDEDVVVMLQKHVLLDYQGQKGHELVLHILYHLHALMISDSVEHSSFAAVVYEKFLLAVVKSLLEKLPASDKSFSKLLGEVPLLPDSALKLLDDLCSSDVTDQHGKVLRDRERVTQGLGAVWSLILGRPLNRQACLNIALKCAVHSQDDIRTKAIRLVANKLYLLSYISENIQQYATDMLLSAVNQHISDPELSQSGSSDQRLEAETGSLETSVSGSQISEPGTSENDPMKGSQSVQNISTVEFHQAQRLISLFFALCTKKPNLLQLVFNIYGRAPKAVKQAIHRHIPIIIGALGPLYPELLSIISDPPEGSENLLTQVLKILTEEKTPTPHLIAIVKHLYETKLKDATILIPMLSLLSRNEVLPIFPRLIDLPLDKFQDALANILQGSAHTGPALTPAEVLVAIHDISPEKDGIALKKITEACSACFEQRTVFTPQVLAKALNQMVDHTPLPLLFMRTVIQAIDAYPTLVDFVMEILSKLVSKQVWRMPKLWVGFLKCVSQTQPHSFRVLLQLPAPQLESALNKHANLRGPLSAYASQPSIKSSLPRSILIVLGLVNEPHMQQSHPPSSLHSSDTSSSVHGATLT* 1064
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6580896 6634655 + Vvi18g566 Vvi18g566 780269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g566 1063 MobiDBLite consensus disorder prediction 259 274 - -
Vvi18g566 1063 MobiDBLite consensus disorder prediction 149 195 - -
Vvi18g566 1063 Coils Coil 134 154 - -
Vvi18g566 1063 Gene3D - 51 158 IPR011989 -
Vvi18g566 1063 MobiDBLite consensus disorder prediction 1039 1063 - -
Vvi18g566 1063 MobiDBLite consensus disorder prediction 248 275 - -
Vvi18g566 1063 Pfam Symplekin/PTA1 N-terminal 57 135 IPR032460 -
Vvi18g566 1063 MobiDBLite consensus disorder prediction 400 421 - -
Vvi18g566 1063 PANTHER SYMPLEKIN-RELATED 232 1063 - -
Vvi18g566 1063 PANTHER SYMPLEKIN-RELATED 58 232 - -
Vvi18g566 1063 MobiDBLite consensus disorder prediction 401 420 - -
Vvi18g566 1063 PANTHER SYMPLEKIN-RELATED 58 232 - -
Vvi18g566 1063 PANTHER SYMPLEKIN-RELATED 232 1063 - -
Vvi18g566 1063 MobiDBLite consensus disorder prediction 668 712 - -
Vvi18g566 1063 Pfam Symplekin tight junction protein C terminal 824 1002 IPR022075 -
Vvi18g566 1063 SUPERFAMILY ARM repeat 12 961 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g566 K06100 SYMPK; symplekin - qsu:111988265 1082.78
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g566 . . . . . . . . . . . Cma09g00609 . . . Cpe06g00470 . . . . . . . . . . . . . . . Cone4ag1271 . . . Lsi04g02305 Csa03g04524 . . . . . . . . . . . . Cmo09g00597 . . . Car09g00540 . Cpe02g00494 Bhi09g02542 Tan01g3889 . . . . . Cla11g01454 Cam11g1507 Cec11g1545 Cco11g1540 Clacu11g1672 Cmu11g1488 Cre11g1908 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004558 1 4 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 3 2 40