Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g572 ATGAGAATTGCAGTGGAAGGGTGCATGCACGGTGACCTAGATAATGTGTACTCAACTCTCCGGTATCTGGAGGAGGTTGAGAACACCAAAATCGATCTTCTCATTTGCTGCGGTGACTTTCAGGCTGTTAGGAACAAAAAGGATTTGGAGAGTCTAAATGTGCCACCAAAATACAGGAGCATGAACTCTTTCTGGAAGTATTACTCAGGACAAGAAGTTGCCCCATTTCCAACTATATTCATTGGTGGGAATCATGAAGCATCCAATTACCTGTGGGAATTGTACTATGGAGGATGGGCAGCGCCTAACATATACTTCTTGGGGTTTGCTGGAGTAGTCAAGTTTGGAAATATTCGTATTGGTGGGCTCTCTGGAATTTATAATGAACGTCATTATCATTTAGGACACTATGAGCGACCACCTTATAATGAAAGGGATATCCGGTCTGTATATCATGTTCGTGAATATGATGTCCATAAGCTTATGCAAGTTGAAGAACCGATTGATATCTTTCTTTCACATGATTGGCCTTGTGGCATCACTGACCATGGGAACTGGAAGGAACTTGTTCGATACAAACCTTTTTTTGAGAAAGAGATCCAGGAAAGAACTTTGGGAAGCAAGGCTGCTGCAGAACTGCTGGAAAAACTGAAACCTTCCTACTGGTTTTCAGCTCACCTACACTGCAAATTTGCTGCTCTTGTTCAACATGGGGAGGTTGGTCAAGTGACTAAATTTCTTGCACTTGACAAGTGCCTTCCAGGTCGCAAATTTTTGCAGATTGTTGAAATAGAAACAGTGCCAGGACCTTATGAGATTCAGTATGATGAAGAATGGTTGGCAATAACACGGAAGTTCAACTCTATCTTTCCTTTAACCATCCATCGTGCAAATTTGGGGGGTGCACAGGTTGACATGCAAGATTGTCGTGATTGGGTAAGGAGTAGGCTACTAACAAGGGGGGCCAAACCTTTCGAATTTGTTCAAACGGTTCCTTGCTATGATCCCTCTCAGTCTGCCTCCAATAGTTGCTTTTCTGGGTATCATCGCAACCCTCAAACGGAGCTTTTGTTGCAATTTTTAGAACTGCCCTATCTTCTGGATAACACATTAGAATCAAGAGATCCAACCCACAGTCCAATGTCATTGATTTCTAGAGGTATATTTTCTCATTCTTTATCAGTGGTAGTTGAAGTAGGCCAACTGCTTTCATTTTGTCTTTAA 1224 42.16 MRIAVEGCMHGDLDNVYSTLRYLEEVENTKIDLLICCGDFQAVRNKKDLESLNVPPKYRSMNSFWKYYSGQEVAPFPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYNERHYHLGHYERPPYNERDIRSVYHVREYDVHKLMQVEEPIDIFLSHDWPCGITDHGNWKELVRYKPFFEKEIQERTLGSKAAAELLEKLKPSYWFSAHLHCKFAALVQHGEVGQVTKFLALDKCLPGRKFLQIVEIETVPGPYEIQYDEEWLAITRKFNSIFPLTIHRANLGGAQVDMQDCRDWVRSRLLTRGAKPFEFVQTVPCYDPSQSASNSCFSGYHRNPQTELLLQFLELPYLLDNTLESRDPTHSPMSLISRGIFSHSLSVVVEVGQLLSFCL* 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6652255 6660443 + Vvi18g572 Vvi18g572 780275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g572 407 SUPERFAMILY Metallo-dependent phosphatases 1 244 IPR029052 -
Vvi18g572 407 SMART DBR1_2 235 367 IPR007708 GO:0006397|GO:0016788
Vvi18g572 407 Pfam Lariat debranching enzyme, C-terminal domain 242 364 IPR007708 GO:0006397|GO:0016788
Vvi18g572 407 Gene3D - 9 267 IPR029052 -
Vvi18g572 407 Pfam Calcineurin-like phosphoesterase 1 229 IPR004843 GO:0016787
Vvi18g572 407 CDD MPP_Dbr1_N 3 259 IPR041816 -
Vvi18g572 407 PANTHER RNA LARIAT DEBRANCHING ENZYME 1 382 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g572 K18328 DBR1; lariat debranching enzyme [EC:3.1.-.-] - vvi:100264324 812.372
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g572 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007675 2 4 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 1 2 1 1 35