Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g576 ATGCAGAATACAGCTTTTATGCACCAGGAAACTTCTGTTTTTAATAGTAGGATCTCCACCATGTCACCAACTCCAGTATGGAATACTTTGATTGACATCTCTGGGTGGTCACTTTCTGGCCGTTTTCCACCAGACGTATGCTCTTACCTGCCCCAGCTGCGGGTTCTTCGTCTCAGCTACAACGACCTTCATGACAATTTTCCAGAGGGCATTGTCAACTGCTCTCTCCTGGAAGAGCTTGATATGAATGTTCCCTTTATACCACCGTCCATAGGGAACATGACATCCCTGGTTGATCTTCAGCTGAGTGGGAACTTCCTCAACGGTCAGATTCCAGCAGAGCTTGGATTGCTGAAGAACTTGCGACTGCTTGAGCTTTATTACAACCAGATTGCTGGTAGAATACCCGAGGAGTTGGGGAATCTGACGGAGCTCAACGATTTAGATATGTCAGTGAACCGGTTGACTGGAAAAATTCCGGAATCCATATGTAAATTGCCCAAGCTCCGGGTCCTGCAGTTTTACAATAACAGCCTTACTGGAGAAATTCCGGAGGCAATTGGTAACTCAACAGCCTTGGCCATGTTATCAATTTACGACAACTTCCTGACAGGAGGAGTTCCAAGAAGTCTGGGACAATGGTCGCCTATGATTCTTTTAGACTTAGTGAGCAATAACCGTTTGGAGGGTCCAATCCCCGAGGGGCTTCTTGGTCTTCCCCGCGTTTCAATCCTTGATTTAGGTTTCAACAATTTGAATGGTCAAATTGGCAAAACAATTGGAACTGCTAGAAACTTGTCAGAATTGTTCATTCAGAGCAACAGGATTTCTGGTGCTCTACCCCCTGAAATATCTCAAGCTACCAATTTGGTGAAGATTGATCTCAGTAACAATCTCTTGTCTGGTCCAATACCTTCAGAAATTGGAAATCTAAATAAGCTAAATCTTTTGCTGTTGCAAGGCAACAAGTTCAATTCTGCCATTCCCAAGTCACTATCTTCATTGAAATCTGTAAATGTCCTTGATCTCTCCAACAATCGCTTGACAGGGAAAATCCCAGAAAGCCTCTCTGAATTCTTTTCAGGCAACCCACATCTCTGTGTTTCGGTCTATGTTAATTCCTCAGATTCGAATTTCCCCATATGTTCTCAAACCGACAACCGAAAGAAGCTAAATTGTATCTGGGTCATTGGGGCTTCTTCAGTGATTGTTATTGTTGGAGTTGTCTTGTTTCTAAAGCGTTGGTTCAGCAAACAAAGAGCTGTGATGGAACATGATGAGAACATGTCTTCATCATTCTTCTCTTATGCCGTAAAGAGCTTTCATCGAATCAATTTTGATCCACGTGAGATCATTGAGGCCTTGATTGATAAGAACATAGTCGGGCACGGAGGATCTGGCACAGTGTACAAAATTGAACTGAGCAATGGGGAAGTTGTCGCTGTGAAGAAGCTGTGGAGAAGGACCCTTTTGGATTGGCCCATTCGGAAAGATTTCACTACTACTGTTATTGCAGGGACTTATGGTTACTTGGCCCCAGAATATGCATATTCATCCAAGGCGACCACCAAGTGTGACGTGTACAGTTTTGGAGTAGTACTCATGGAACTAATAACTGGGAAGAAGCCAGTAGAGGCAGAGTTTGGGGAGAACAAGAATATCATATATTGGGTTGCAACCAAAGTGGGTACGATGGAAGGAGCTATGGAGGTTCTAGACAAGCGCTTATCAGGGTCCTTCAGAGACGAGATGCTTCAGATGCTGCGGATTGGCCTCCGCTGCACGAGTAGCAGCCCGGCCCTTCGCCCAACTATGAATGAGGTTGCCCAGTTGTTGACTGAGGCGGACCCATGCAGAGTCGATTCTTGCAAGTTGTCATGCAAGACCAAAGAGACGTCCAATGTCACCAAGACAAAGAACCCATTTGAATTATGA 1935 44.7 MQNTAFMHQETSVFNSRISTMSPTPVWNTLIDISGWSLSGRFPPDVCSYLPQLRVLRLSYNDLHDNFPEGIVNCSLLEELDMNVPFIPPSIGNMTSLVDLQLSGNFLNGQIPAELGLLKNLRLLELYYNQIAGRIPEELGNLTELNDLDMSVNRLTGKIPESICKLPKLRVLQFYNNSLTGEIPEAIGNSTALAMLSIYDNFLTGGVPRSLGQWSPMILLDLVSNNRLEGPIPEGLLGLPRVSILDLGFNNLNGQIGKTIGTARNLSELFIQSNRISGALPPEISQATNLVKIDLSNNLLSGPIPSEIGNLNKLNLLLLQGNKFNSAIPKSLSSLKSVNVLDLSNNRLTGKIPESLSEFFSGNPHLCVSVYVNSSDSNFPICSQTDNRKKLNCIWVIGASSVIVIVGVVLFLKRWFSKQRAVMEHDENMSSSFFSYAVKSFHRINFDPREIIEALIDKNIVGHGGSGTVYKIELSNGEVVAVKKLWRRTLLDWPIRKDFTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGKKPVEAEFGENKNIIYWVATKVGTMEGAMEVLDKRLSGSFRDEMLQMLRIGLRCTSSSPALRPTMNEVAQLLTEADPCRVDSCKLSCKTKETSNVTKTKNPFEL* 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6723749 6733513 + Vvi18g576 Vvi18g576 780279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g576 644 Gene3D Transferase(Phosphotransferase) domain 1 500 641 - -
Vvi18g576 644 SUPERFAMILY Protein kinase-like (PK-like) 451 615 IPR011009 -
Vvi18g576 644 SMART serkin_6 455 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g576 644 ProSiteProfiles Protein kinase domain profile. 338 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g576 644 SMART LRR_sd22_2 142 168 - -
Vvi18g576 644 SMART LRR_sd22_2 287 313 - -
Vvi18g576 644 SMART LRR_sd22_2 335 358 - -
Vvi18g576 644 SMART LRR_sd22_2 118 141 - -
Vvi18g576 644 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 87 225 - -
Vvi18g576 644 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 30 83 - -
Vvi18g576 644 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 223 359 - -
Vvi18g576 644 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 496 637 - -
Vvi18g576 644 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 358 491 - -
Vvi18g576 644 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 30 83 - -
Vvi18g576 644 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 87 225 - -
Vvi18g576 644 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 496 637 - -
Vvi18g576 644 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 358 491 - -
Vvi18g576 644 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 223 359 - -
Vvi18g576 644 SMART LRR_typ_2 50 74 IPR003591 -
Vvi18g576 644 SMART LRR_typ_2 335 359 IPR003591 -
Vvi18g576 644 SMART LRR_typ_2 118 142 IPR003591 -
Vvi18g576 644 SMART LRR_typ_2 166 190 IPR003591 -
Vvi18g576 644 Pfam Protein kinase domain 501 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g576 644 SUPERFAMILY RNI-like 31 372 - -
Vvi18g576 644 ProSitePatterns Protein kinases ATP-binding region signature. 461 484 IPR017441 GO:0005524
Vvi18g576 644 Pfam Leucine Rich Repeat 340 358 IPR001611 GO:0005515
Vvi18g576 644 Gene3D Phosphorylase Kinase; domain 1 430 499 - -
Vvi18g576 644 Gene3D Ribonuclease Inhibitor 12 378 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g576 - - - vvi:100257433 553.132
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g576 Blo01g01785 . . Bda03g00445 . Bpe04g00409 . Bma01g02569 Cmo05g00597 Cmo12g00184 Cma01g01455 Cma09g00611 . Car12g00210 . Cpe06g00472 Cpe07g00194 Bhi04g00891 . . . . . Lcy13g1799 . . . . . . . Cone4ag1266 Cone7ag0878 Cone17ag1151 Cone20ag0577 Lsi04g02309 Csa03g04527 Chy04g00175 Cme03g01772 . . . Bda13g01341 . Bpe14g00504 . Bma02g00096 . Cmo01g01507 Cmo09g00599 Cma12g00230 Cma05g00571 Car05g00517 Car09g00542 Cpe11g00500 Cpe02g00496 Bhi09g02546 . . . . . . . . . . . . . . Csa02g02237 Chy03g01278 Cme04g00205
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001786 1 2 3 2 2 1 3 1 1 2 2 2 4 2 1 4 1 4 3 1 2 2 2 2 1 2 2 2 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76378 PF00069 Pkinase 8.60E-10 CL0016 Vvi PK