Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g577 ATGAGAGAGTGCATTTCCATTCACATTGGTCAGGCCGGTATTCAGGTTGGCAATGCGTGCTGGGAACTTTACTGCCTCGAGCATGGCATTCAGCCTGATGGCCAGATGCCAAGTGATAAGACTGTTGGCGGAGGAGATGACGCATTCAACACCTTTTTCAGTGAAACTGGTGCTGGGAAGCATGTCCCTCGTGCCGTTTTTGTAGATCTCGAGCCCACCGTGATTGATGAAGTGAGGACTGGAGCATACCGACAGCTCTTCCACCCAGAACAACTCATCAGTGGCAAGGAGGATGCAGCTAACAACTTTGCCCGTGGCCATTACACCATTGGGAAAGAGATTGTTGACCTCTGTTTGGACCGTATCAGAAAGCTTGCCGACAACTGCACTGGTCTTCAGGGTTTCCTGGTCTTCAATGCTGTTGGAGGTGGAACTGGTTCTGGCCTTGGGTCTCTTTTGTTGGAGCGACTATCTGTTGACTACGGCAAAAAGTCAAAGCTTGGATTCACTGTTTACCCCTCCCCTCAGGTTTCAACATCTGTTGTTGAGCCCTATAACAGTGTCCTTTCAACCCACTCCCTGCTTGAGCACACTGATGTAGCTGTGCTTCTGGACAATGAAGCAATCTATGACATTTGCAGGCGATCCCTTGACATTGAGCGCCCAACCTACACCAATCTCAATCGCCTGGTGTCTCAAGTGATTTCATCACTCACTGCCTCATTGAGATTTGATGGTGCCTTGAATGTGGATGTGACTGAATTCCAGACCAACCTGGTTCCTTACCCAAGGATTCACTTTATGCTTTCTTCATATGCCCCCGTCATTTCCGCTGAGAAGGCATATCATGAGCAGCTCTCTGTGGCGGAGATCACCAACAGTGCCTTTGAGCCCTCGTCTATGATGGCCAAATCCACCATCAAGACCAAGCGCACTATCCAGTTTGTTGACTGGTGCCCTACTGGATTCAAGTGTGGTATCAACTACCAGCCACCAACTGTTGTTCCAGGAGGTGACCTTGCCAAGGTGCAGAGGGCTGTTTGCATGATCTCTAACTCAACCAGTGTTGCCGAAGAAGGAGAGTTCTCTGAAGCTCGTGAGGATCTTGCTGCCCTGGAGAAGGATTATGAGGAAGTTGGTGCAGAGTCTGCTGAGGGGGATGAAGGTGACGAAGGAGATGAATATTGA 1188 49.66 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKSTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEEGEFSEAREDLAALEKDYEEVGAESAEGDEGDEGDEY* 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6747125 6750253 + Vvi18g577 Vvi18g577 780280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g577 395 MobiDBLite consensus disorder prediction 380 395 - -
Vvi18g577 395 Gene3D Helix hairpin bin 355 395 IPR023123 -
Vvi18g577 395 PANTHER TUBULIN 358 391 IPR000217 GO:0005874|GO:0007017
Vvi18g577 395 PANTHER TUBULIN 1 305 IPR000217 GO:0005874|GO:0007017
Vvi18g577 395 PANTHER TUBULIN 304 358 IPR000217 GO:0005874|GO:0007017
Vvi18g577 395 MobiDBLite consensus disorder prediction 374 395 - -
Vvi18g577 395 Pfam Tubulin/FtsZ family, GTPase domain 3 213 IPR003008 GO:0005525
Vvi18g577 395 SUPERFAMILY Tubulin C-terminal domain-like 246 380 IPR008280 -
Vvi18g577 395 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Vvi18g577 395 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874|GO:0007017
Vvi18g577 395 PRINTS Tubulin signature 95 106 IPR000217 GO:0005874|GO:0007017
Vvi18g577 395 PRINTS Tubulin signature 108 132 IPR000217 GO:0005874|GO:0007017
Vvi18g577 395 PRINTS Tubulin signature 134 152 IPR000217 GO:0005874|GO:0007017
Vvi18g577 395 PRINTS Tubulin signature 153 174 IPR000217 GO:0005874|GO:0007017
Vvi18g577 395 PRINTS Tubulin signature 178 191 IPR000217 GO:0005874|GO:0007017
Vvi18g577 395 PRINTS Tubulin signature 192 212 IPR000217 GO:0005874|GO:0007017
Vvi18g577 395 PANTHER TUBULIN ALPHA CHAIN 304 358 - -
Vvi18g577 395 PANTHER TUBULIN ALPHA CHAIN 1 305 - -
Vvi18g577 395 PANTHER TUBULIN ALPHA CHAIN 358 391 - -
Vvi18g577 395 SMART Tubulin_C_4 248 365 IPR018316 -
Vvi18g577 395 Gene3D - 305 354 IPR037103 -
Vvi18g577 395 Gene3D Tubulin/FtsZ, GTPase domain 1 265 IPR036525 -
Vvi18g577 395 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 244 IPR036525 -
Vvi18g577 395 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 142 148 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vvi18g577 395 PRINTS Alpha-tubulin signature 18 33 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g577 395 PRINTS Alpha-tubulin signature 45 58 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g577 395 PRINTS Alpha-tubulin signature 88 101 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g577 395 PRINTS Alpha-tubulin signature 120 128 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g577 395 PRINTS Alpha-tubulin signature 148 160 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g577 395 PRINTS Alpha-tubulin signature 161 172 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g577 395 PRINTS Alpha-tubulin signature 214 226 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g577 395 PRINTS Alpha-tubulin signature 274 289 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g577 395 PRINTS Alpha-tubulin signature 319 332 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g577 395 PRINTS Alpha-tubulin signature 332 351 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g577 395 Coils Coil 355 382 - -
Vvi18g577 395 SMART Tubulin_4 49 246 IPR003008 GO:0005525
Vvi18g577 395 Gene3D - 266 304 IPR037103 -
Vvi18g577 395 CDD alpha_tubulin 2 379 - -
Vvi18g577 395 Pfam Tubulin C-terminal domain 305 358 IPR018316 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g577 K07374 TUBA; tubulin alpha - vvi:100247081 709.138
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g770 Vvi18g577 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g577 . . Bda01g00928 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00080 Blo18g00091 . . Bpe02g01727 Bpe14g00506 Bma01g00727 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000221 6 4 6 6 4 5 8 5 5 5 5 5 8 5 5 9 5 12 9 5 5 4 4 5 5 4 5 6 3 5 168