Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g580 ATGTCGTTTTCATTGACGCCTTCTAAGAGATCATATGAGCGGAGCCTTACTGATTCTAATGGGAAAGGGAAATGGCAAAAGTCAGGAGGTTTTTATTCACAAAATCAATCGTTGAAAATCTCTCCTGGTACTGTTGTTTTTCGTGTACTCTGCCCTGCTTCTAAAACTGGTAGTGTCATTGGGAAGGGTGGCACCATAATTTCACAAATACGTCAAGAAACTGGTGTAAAGGTAAGGGTTGAGGAAACTGTATCCGGATGTGATGAGAGAGTGGTACTTATCACTGGTTCTGATAAAGACACAGAAGCTGACAATGAACAGAGCAAAGAAGATGATTCACAAGTTGAAAAGGGAATTTCATCTGTGCAGAAAGCTCTTTTACTTGTTTTTGAAAGAATGGCAGAAGGAGAATCAGAGACAAATGGAGGGGATGAAGATAGTAATAAGTCTCCTACTTTTGTTGTAAGGTTACTTGTGCTTTCTAGTCAAGTGGGCTGTCTTCTGGGAAAGGGTGGCAGTGTCATCAAGCAAATGTCAGCTGAAAGTGGGGCACAGATTCGCATTCTTCCTAGGGACAAGCTTCCTCTATGTGCATCACCTTCTGATGAACTGGTTCAGATCACCGGGGAATTGGATGCATGTAAACAAGCTCTTCAATCTATTTCTCAACAACTTCTGGAGAATCCACCTCGGGACTATGATATAGTTTCTACCAATCCTACTGGGTCATCATCTCATTTATTTGGTCCTCCTCTTCCTAGGTCTGAAGCACAGCCACCGCCGAACTACTCTTTCCCTGCACAAGGTGCACCTTATGCTGCTGGGGTTCGTGATACCGATTATCACTCAAATACTCCCCAACTTCATAAATTTCATGAAAGTGGCATGCCTGGTTGGATGAAACCTCAGGATATTCTGACCTTCAGGTTATTGTGTCATGATGAGAGGGTGGGAGGTATAATTGGAAAGGGAGGAACCATAATTAAGAACCTTCAGAATGAGACAGGCTGTGAGATCAAAGTTTTGGATGGTGTTCCTGATTCAGAGGACCGGGTCATATTCATTTCTGGTTCAGCGCACCCAGATGATAGGATATCTCCAGCCCAAGATGCAGTTCTCCGTGTGCAGAGCAGGATAGTCAGGGCTATACCTGATAGCAAGGAGAAGACTGTGATAGCAAGGCTACTTGTGTCTTCCACTCAAATTGGTTGCCTCCTAGGGAAGGGTGGTGCCATCATAGCTGAAATGAGGAAATTATCTGGGGCTCATATACGTATATTGGGGAAGGATCAGATTCCAAAGTGTGCTTCAGAAAATGAAGAAGTAGTTCAGATAAATGGAGAATTTGAAGCAGTTCAAGAGGCGCTTTTGCAGATAACCACTAGGTTGCGGCATCATCACTTCCGTGATGCATTTTCTGTCAACCATCCATCTAATCCTGCTTTTACAGATCAAGTACCGCCTTTTCCTCCATATTTGGCAAGGAGGGAATTTTCACCTCCTGGGATGTATTCTAATTTAGGTCCATCCTTTCATAAGTTTGATGCTGTTGGTGTCCTGCATCCACATGGTGGTTTTCATCCCCATGATGATCGAGCTCCATTTATGCACAGCATCCACAGGCTGGGCATCCCCCCTCATATTCCTGAAAGAAAGCCATCTTCTGCACCATGGGGTCACCAGGGCCTGATTGAAGGTGGTGTCCCAATAGGATTGGCAGACTTTGCAGGAGGCCCCCAACGAAGAATACCGGGATTTGGAGGAGGAAACCAACAAGCTATTATCACAAGCACCACTGTTGAAGTTGTTGTTCCTCGTTCTCTTGTTCCTTCAATTTATGGGGAGGATGGTGGATGTTTGAGACAAATCCGGCAGATTTCTGATGCAAAAATTACCATTACTGAGCCTAAACCTGGAGCATCAGAAACTGTGATTATAATATCTGGGACGCCTGAGCAGACCCATGCTGCACAGAGTCTTATTCAAGCATTTGTGTTAAGTGAGACGGAATCGCCTTGA 2019 44.43 MSFSLTPSKRSYERSLTDSNGKGKWQKSGGFYSQNQSLKISPGTVVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVVLITGSDKDTEADNEQSKEDDSQVEKGISSVQKALLLVFERMAEGESETNGGDEDSNKSPTFVVRLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRILPRDKLPLCASPSDELVQITGELDACKQALQSISQQLLENPPRDYDIVSTNPTGSSSHLFGPPLPRSEAQPPPNYSFPAQGAPYAAGVRDTDYHSNTPQLHKFHESGMPGWMKPQDILTFRLLCHDERVGGIIGKGGTIIKNLQNETGCEIKVLDGVPDSEDRVIFISGSAHPDDRISPAQDAVLRVQSRIVRAIPDSKEKTVIARLLVSSTQIGCLLGKGGAIIAEMRKLSGAHIRILGKDQIPKCASENEEVVQINGEFEAVQEALLQITTRLRHHHFRDAFSVNHPSNPAFTDQVPPFPPYLARREFSPPGMYSNLGPSFHKFDAVGVLHPHGGFHPHDDRAPFMHSIHRLGIPPHIPERKPSSAPWGHQGLIEGGVPIGLADFAGGPQRRIPGFGGGNQQAIITSTTVEVVVPRSLVPSIYGEDGGCLRQIRQISDAKITITEPKPGASETVIIISGTPEQTHAAQSLIQAFVLSETESP* 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6775054 6788180 - Vvi18g580 Vvi18g580 780283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g580 672 Gene3D K Homology domain, type 1 44 137 IPR036612 GO:0003723
Vvi18g580 672 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 142 232 IPR036612 GO:0003723
Vvi18g580 672 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 1 526 - -
Vvi18g580 672 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 600 657 - -
Vvi18g580 672 MobiDBLite consensus disorder prediction 234 248 - -
Vvi18g580 672 MobiDBLite consensus disorder prediction 1 28 - -
Vvi18g580 672 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 600 657 - -
Vvi18g580 672 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1 526 - -
Vvi18g580 672 CDD PCBP_like_KH 154 222 - -
Vvi18g580 672 Gene3D K Homology domain, type 1 305 381 IPR036612 GO:0003723
Vvi18g580 672 CDD PCBP_like_KH 394 460 - -
Vvi18g580 672 ProSiteProfiles Type-1 KH domain profile. 390 459 - -
Vvi18g580 672 Gene3D K Homology domain, type 1 387 467 IPR036612 GO:0003723
Vvi18g580 672 Gene3D K Homology domain, type 1 150 230 IPR036612 GO:0003723
Vvi18g580 672 ProSiteProfiles Type-1 KH domain profile. 597 661 - -
Vvi18g580 672 ProSiteProfiles Type-1 KH domain profile. 305 372 - -
Vvi18g580 672 MobiDBLite consensus disorder prediction 229 260 - -
Vvi18g580 672 Pfam KH domain 394 459 IPR004088 GO:0003723
Vvi18g580 672 Pfam KH domain 599 662 IPR004088 GO:0003723
Vvi18g580 672 Pfam KH domain 307 359 IPR004088 GO:0003723
Vvi18g580 672 Pfam KH domain 155 222 IPR004088 GO:0003723
Vvi18g580 672 Pfam KH domain 47 101 IPR004088 GO:0003723
Vvi18g580 672 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 385 468 IPR036612 GO:0003723
Vvi18g580 672 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 597 667 IPR036612 GO:0003723
Vvi18g580 672 ProSiteProfiles Type-1 KH domain profile. 44 115 - -
Vvi18g580 672 Gene3D K Homology domain, type 1 595 668 IPR036612 GO:0003723
Vvi18g580 672 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 39 100 IPR036612 GO:0003723
Vvi18g580 672 SMART kh_6 389 464 IPR004087 GO:0003676
Vvi18g580 672 SMART kh_6 304 377 IPR004087 GO:0003676
Vvi18g580 672 SMART kh_6 596 666 IPR004087 GO:0003676
Vvi18g580 672 SMART kh_6 151 226 IPR004087 GO:0003676
Vvi18g580 672 SMART kh_6 43 127 IPR004087 GO:0003676
Vvi18g580 672 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 294 366 IPR036612 GO:0003723
Vvi18g580 672 ProSiteProfiles Type-1 KH domain profile. 152 221 - -
Vvi18g580 672 CDD PCBP_like_KH 46 130 - -
Vvi18g580 672 MobiDBLite consensus disorder prediction 95 117 - -
Vvi18g580 672 CDD KH-I 599 662 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g580 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - vvi:100267715 1329.31
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35