Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g590 ATGGAGGATTATAATCAACTGGGGGAGAATACGACCTCTAGAGCTAGTTTCTTGTACACTTCTTCGGTTCTTGCACCGAATTCCTCATGTTTTCAATCTGAAGCACATCCGGTAGTGAAGACCGAAGCGAGCACTTCTCAACATGCTCAGAAATTTCACTACCCTATAATTAGAGGGCACCAAACAGTTGATCATCAGCAACAGCAACAAGGGAACGAAAGCTTCAGTGAAGTTGAAGCCATTAAAGCCAAGATCATCGCCCATCCTCAATATTCCAACCTTTTGGAAGCTTACATGGATTGTCAAAAGGTGGGAGCCCCACCCGAAGTAGTAGAGCGACTTGCGGCTGTTCGCCAGGAGTTCGAGTCACGGCAGCGATCTTCAGTCACTTGCAGAGATGCTTCAAAGGACCCAGAACTGGACCAGTTCATGGAAGCTTACTACGACATGCTGGTAAAATATCGGGAAGAACTAACAAGGCCACTACAAGAGGCAACGGATTTCATGCGTAGGATCGAATCACAGCTAAATATGCTTAGCAATGGTCCCGTGCGGATCTTCACCTCCGATGAGAAGTGCGAGGGTGTTGGTTCCTCAGAAGAGGATCAAGACAACAGTGGTGGGGAAACTGAACTTCCTGAGATTGATCCACGGGCGGAAGATAGAGAACTTAAGAACCACCTGTTGAGGAAGTATAGTGGTTACTTAAGTAGTCTCAAGCAAGAGCTTTCCAAGAAAAAGAAGAAAGGGAAACTACCCAAAGACGCCAGGCAGAAGCTACTCAATTGGTGGGAGTTACACTACAAATGGCCATACCCCTCAGAGACAGAGAAGGTGGCCTTGGCTGAAACTACTGGTTTGGACCAGAAACAAATTAATAATTGGTTCATAAACCAAAGGAAAAGACACTGGAAACCTTCTGAAGATATGCAATTCATGGTGATGGATGGCCTCCATCCCCAGAATGCAGCCCTCTATATGGAAAGTCACTATATGGGCGATGGTGCTTATCGTTTGGGGCCATGA 1026 46.3 MEDYNQLGENTTSRASFLYTSSVLAPNSSCFQSEAHPVVKTEASTSQHAQKFHYPIIRGHQTVDHQQQQQGNESFSEVEAIKAKIIAHPQYSNLLEAYMDCQKVGAPPEVVERLAAVRQEFESRQRSSVTCRDASKDPELDQFMEAYYDMLVKYREELTRPLQEATDFMRRIESQLNMLSNGPVRIFTSDEKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAETTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAALYMESHYMGDGAYRLGP* 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6870319 6876771 + Vvi18g590 Vvi18g590 780293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g590 341 ProSiteProfiles ELK domain profile. 223 243 IPR005539 GO:0003677
Vvi18g590 341 ProSiteProfiles 'Homeobox' domain profile. 243 306 IPR001356 GO:0003677
Vvi18g590 341 CDD homeodomain 255 307 IPR001356 GO:0003677
Vvi18g590 341 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 15 333 - -
Vvi18g590 341 SMART ELK_2 223 244 IPR005539 GO:0003677
Vvi18g590 341 Pfam ELK domain 223 244 IPR005539 GO:0003677
Vvi18g590 341 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 15 333 - -
Vvi18g590 341 SMART HOX_1 245 310 IPR001356 GO:0003677
Vvi18g590 341 SMART KNOX1_2 79 123 IPR005540 GO:0003677|GO:0005634
Vvi18g590 341 ProSitePatterns 'Homeobox' domain signature. 281 304 IPR017970 GO:0000981|GO:0006355
Vvi18g590 341 Pfam Homeobox KN domain 263 302 IPR008422 GO:0003677|GO:0006355
Vvi18g590 341 MobiDBLite consensus disorder prediction 190 220 - -
Vvi18g590 341 SUPERFAMILY Homeodomain-like 244 318 IPR009057 -
Vvi18g590 341 Gene3D - 248 310 - -
Vvi18g590 341 Pfam KNOX1 domain 80 122 IPR005540 GO:0003677|GO:0005634
Vvi18g590 341 Pfam KNOX2 domain 135 179 IPR005541 GO:0003677|GO:0005634
Vvi18g590 341 SMART KNOX2_2 130 181 IPR005541 GO:0003677|GO:0005634
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14342 PF03791 KNOX2 2.40E-24 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g590 - - vvi:100255834 650.588