Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g591 ATGGGTTTTGAAGATGTTTGTTGCACAGGCCTTGGTCTTGGTTTAGGCCGCCAGGATCGCCCTCAGAGTCGTTTGCAGTCCGATCATCAAGAGAAGAAGAAGAAGCTATGCTTGAAATATGATAACTCCTTCCCGTGTCTTACGCTAGGCCCATCGGAAGATACGTATCAATTGGCTGCAAAGATTAATGATGCTGGTAAAGGGTATGGTGAATCAACCGATTTGCACAGACAGGCCTCTTCTCTTAGTGCAGTGTCATCATTTTCTAACTCTAGTATTAAAAAGGAGAGAGACTTATGTGGTGAGGTAGAGGTAGAGGTAGAAATAGAGAGAGTCTCTTCAAGGGCAAGTGATGAAGACGAAGAGGGTAATTCGAGGAAGAAACTTAGACTTACCAAGGAACAAGCTGTCATTTTAGAAGACAGCTTCAAACAACACAGCACTCTCAATCCTAGACAAAAGCAAGTCTTAGCCAAACAGTTGAATCTTCGGCCACGACAAGTAGAAGTGTGGTTCCAAAACAGGAGGGCCAGGACAAAGCTGAAGCAAACTGAAGTGGACTGCGAGTTGTTGAGAAAGCGTTGCGAAACACTGACAGATGAGAATCAAAGGCTGCAGAAGGAGCTGCAAGAGCTGAAAGCACTAAAACTAGCGACCCCTTTATATATGCAGCTGCCTGCAGCTACCCTAACCATGTGCCCTTCTTGTGAGAGAATTGGGAGTGGTGGCGACGCCTCGTCTAAGACTTCTTTCACGATCGGAGCAAAGCCTCGCTTCTCAATAACTGATTTTTATTCATCCGGCAATCTTAGTTTTCACTTGTTTGTTTGGATTCGAGGAAAAAGCATGAGAAACATAAATCTTGACGAGTTAGTTGTGAGAAGGCCACACCATTAA 897 44.59 MGFEDVCCTGLGLGLGRQDRPQSRLQSDHQEKKKKLCLKYDNSFPCLTLGPSEDTYQLAAKINDAGKGYGESTDLHRQASSLSAVSSFSNSSIKKERDLCGEVEVEVEIERVSSRASDEDEEGNSRKKLRLTKEQAVILEDSFKQHSTLNPRQKQVLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLRKRCETLTDENQRLQKELQELKALKLATPLYMQLPAATLTMCPSCERIGSGGDASSKTSFTIGAKPRFSITDFYSSGNLSFHLFVWIRGKSMRNINLDELVVRRPHH* 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6881992 6883411 - Vvi18g591 Vvi18g591 780294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g591 298 Pfam Homeobox associated leucine zipper 182 216 IPR003106 GO:0006355|GO:0043565
Vvi18g591 298 PANTHER - 8 258 - -
Vvi18g591 298 Pfam Homeodomain 126 180 IPR001356 GO:0003677
Vvi18g591 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 8 258 - -
Vvi18g591 298 SMART halz 182 225 IPR003106 GO:0006355|GO:0043565
Vvi18g591 298 Gene3D - 130 180 - -
Vvi18g591 298 CDD homeodomain 126 183 IPR001356 GO:0003677
Vvi18g591 298 SUPERFAMILY Homeodomain-like 124 191 IPR009057 -
Vvi18g591 298 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Vvi18g591 298 SMART HOX_1 124 186 IPR001356 GO:0003677
Vvi18g591 298 Coils Coil 174 218 - -
Vvi18g591 298 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14343 PF00046 Homeodomain 2.30E-16 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g591 K09338 - vvi:100259040 474.167