Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g593 ATGATCAGTAGGAGGGCCTGCTTTCGCAATTTGATCCTATCTCTAAGAACGGGTTCCACTGCATCTAAGCTTAGATCTTCCAATTGCTTTACGTCGAGGACTGCACCTTCCTTGCAGCCACTGGTCGAGCCCTCTCCTTATAGTGATGATGAGTATGCTGATGTGGACTGGGACAATCTGGGATTTGGTCTAATACCCACCGATTACATGTACACAACAAAATGCTCCGAGGGTGGTAATTTTGAAGAAGGCCATCTTAGTCGCTATGGAAATATCGAGTTGAGCCCTTCTGCTGGCGTGTTAAATTATGGACAGGGGCTGTTTGAAGGCACCAAAGCCTATAGGAGAGAAAATGGGCGCCTCTGCCTCTTCCGCCCTGATCAGAATGCCATCCGTATGCAGGTTGGTGCAGAAAGGATGTGCATGCCTTCCCCGTCCATCCATCATTTTGTAGAAGCTGTGAAGCAAACCGCTCTCGCTAACAAGCGCTGGATTCCTCCTCCAGGGAAAGGGTCACTGTATATTAGACCTTTGCTCATGGGAAGTGGACCCGTATTGGGTTTAGGCCCAGCACCTGAATGCACATTCCTCATATATGCTTCCCCTGTTGGCAACTATTTCAAGCAGGTTTCGGCACCATTGAACCTATTTATTGACGATGAGTATCATCGTGCAACTCGTGGAGGGGCTGGAGGGGTAAAAGCCATTACCAACTATTCTCCTGTTTTGAAAGCACAAAGTAGAGCAAAGAGTAGAGGGTTCTCTGATGTGCTATTCCTTGATTCAGTGAATAAGAAAAACATCGAGGAGGTCTCTTCTTGTAACATCTTCATTGTGAAGGATAATGTTATTTCAACTCCAGCTACAGGAGGAACTATTCTTGAAGGAGTGACTCGAAAAAGCATTATTGACATTGCTCTTGATCATGGTTACCAGGTTAAGGAGCGATGTATTCCGGTGGAGGAAGTGATGGAAGCCGATGAAGTTTTCTGCACCGGAACCGCTGTTGGTGTAGCTGCGGTGGGAAGTATTACATATCAAGGCAAAAGGGTGGAATACAAATCGGGTGATCGGTGTGTGAGTCAGGAACTGTTGTCAATGTATACGGGGATTCAAAAAGGTCATATTGAGGACAAGAAGGGCTGGATTCTGGAGATTGACTAA 1164 46.39 MISRRACFRNLILSLRTGSTASKLRSSNCFTSRTAPSLQPLVEPSPYSDDEYADVDWDNLGFGLIPTDYMYTTKCSEGGNFEEGHLSRYGNIELSPSAGVLNYGQGLFEGTKAYRRENGRLCLFRPDQNAIRMQVGAERMCMPSPSIHHFVEAVKQTALANKRWIPPPGKGSLYIRPLLMGSGPVLGLGPAPECTFLIYASPVGNYFKQVSAPLNLFIDDEYHRATRGGAGGVKAITNYSPVLKAQSRAKSRGFSDVLFLDSVNKKNIEEVSSCNIFIVKDNVISTPATGGTILEGVTRKSIIDIALDHGYQVKERCIPVEEVMEADEVFCTGTAVGVAAVGSITYQGKRVEYKSGDRCVSQELLSMYTGIQKGHIEDKKGWILEID* 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6907054 6910618 + Vvi18g593 Vvi18g593 780296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g593 387 CDD BCAT_beta_family 93 374 IPR033939 GO:0004084|GO:0009081
Vvi18g593 387 Gene3D - 38 215 IPR043131 -
Vvi18g593 387 Gene3D - 216 387 IPR043132 -
Vvi18g593 387 ProSitePatterns Aminotransferases class-IV signature. 270 299 IPR018300 GO:0003824
Vvi18g593 387 TIGRFAM ilvE_II: branched-chain amino acid aminotransferase 82 386 IPR005786 GO:0004084|GO:0009081
Vvi18g593 387 PANTHER AMINO ACID AMINOTRANSFERASE 10 387 IPR005786 GO:0004084|GO:0009081
Vvi18g593 387 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 47 383 IPR036038 GO:0003824
Vvi18g593 387 PANTHER BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE 10 387 - -
Vvi18g593 387 PIRSF BCAT1 39 387 IPR005786 GO:0004084|GO:0009081
Vvi18g593 387 Pfam Amino-transferase class IV 106 344 IPR001544 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g593 K00826 E2.6.1.42, ilvE; branched-chain amino acid aminotransferase [EC:2.6.1.42] - vvi:100266106 780.015
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g593 . . . . . . . . Cmo05g00119 . . . . Car12g00561 . . . Bhi04g00472 . . . . . . . . . . . . . Cone6ag1482 . Cone8ag0180 Cone12ag0187 . . . . . . . . . . . . . . . . Cma05g00115 . . Cpe11g00101 . . . . . . . . . . . . . . . . Csa02g01862 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007941 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 36