Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g600 ATGTCGAGGAAGCCAGTAAATCCCTCTCGACGCTTTGCAGGCAGCGGAACTCTTCCATTTATAGGCTCGTTGCATTCAAAATCACGCGCTTCCCCATTTTTATCTATAGGGCTTCTCATCATGGGAGCAATGCTTCTTATTGGGTATTCATATAGCGGCTCAGGTTCATTTGGCGGTAATAAGCAGGCTGCTGTGAGCAGGGTTCAAGGTGACTTTTCATGCACAGCAGAAGTTCACTGGGCAATTCCATTTCTGAAGAAAGCTTATGGTGACAGCATGCATAAAGTTTTGCATGTTGGCCCAGACTCTTGTTCAATTGTTTCTAAATTGCTAAAAGAAGAGGAGACTGAAGCCTGGGGTGTGGAACCATATGACATAGAGGAAGCTGATAGTAACTGTAAAAGTCTGGTGCACAAAGGCATTGTACGTGTGGCTGATATTAAGTTTCCTCTTCCGTATAGGGCAAAATCATTTTCTCTTGTGATTGTGTCGGATGCATTGGATTACTTGTCCCCAAAGTACCTCAACAAAACCCTTCCAGATTTAGCAAGGGTTTCAGCTGATGGTCTTATTATTTTTGCAGGTTTTCCAGGACAACAGAGAGCTAAAGTTTCAGAAGTATCCAAATTTGGTCGGCCGGCTAAATTGAGGAGTTCGTCTTGGTGGGTACGCTATTTTGTCCAGACTAGCTTAGAAGAGAATGAAGCTGCCATCAAGAAGTTCGAACCAGCTATAACAAAGAGCTCATACAACCCAAGCTGCCAAATTTTCCACCTCAAGTCTTACAATTGA 792 43.43 MSRKPVNPSRRFAGSGTLPFIGSLHSKSRASPFLSIGLLIMGAMLLIGYSYSGSGSFGGNKQAAVSRVQGDFSCTAEVHWAIPFLKKAYGDSMHKVLHVGPDSCSIVSKLLKEEETEAWGVEPYDIEEADSNCKSLVHKGIVRVADIKFPLPYRAKSFSLVIVSDALDYLSPKYLNKTLPDLARVSADGLIIFAGFPGQQRAKVSEVSKFGRPAKLRSSSWWVRYFVQTSLEENEAAIKKFEPAITKSSYNPSCQIFHLKSYN* 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6969509 6975251 - Vvi18g600 Vvi18g600 780303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g600 263 PANTHER PECTIN METHYLESTERASE CGR3-RELATED 1 263 - -
Vvi18g600 263 Gene3D Vaccinia Virus protein VP39 81 251 IPR029063 -
Vvi18g600 263 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 1 263 IPR044689 GO:0008168|GO:0045488
Vvi18g600 263 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 83 199 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g600 K23871 CGR; putative pectin methylesterase [EC:2.1.1.-] - vvi:100243785 505.753
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g600 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1479 Cone9ag1402 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000838 3 2 2 3 2 2 4 2 2 2 2 2 3 2 3 4 2 4 4 2 3 3 2 2 2 2 2 13 4 2 87