Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g601 ATGTCGGAGGGCAAGAATATGAGAGAAGATGATAATGAGAAAGGGAGTGACAATAATCCATGGGCGCGGTCAAACGGACAGTATGAGGAAAAAGGCGAAGGCATGCGACTTTGGGGAATTTTCCTCTTCAGTTTGATTGGAGCCACCGTCACCACTTTCGCCGTTGGGCAGTTTCGTAGAACAGCTGGTTGGTTCTATACTCAGTTTGCTAGGTCACAATCATCAAGGAATGGTGCAACTGGTAGTTCTTTTCGGTCAAGTTTTCAGGAGGAAGCATGGAAAAGATATAATCGTCGAATGCAAGAGGAATATGAAGAAGAAATGGAGAGAGTGGAGCGTATAAAGCGTATGCAGAGTGTATTCAACCGAGAGAGGAATAAATACAAGAGAAGCTACGAGAGTTGGCGTGAAAATGGTGAAGGTCCATATCATCAACATTTCCAGAGGGATGACTGGTATTGGAAAACTGATACATCCTACAAATATCAAAGGGCTAATGCCAGGGAAATTCCTAGAGACAGAACCAGTGCAAGTTATCCACTATCCCATCACTATTTAACTTTGGGTCTTGACAGGACAAGAGCAAAACCATATACAGAAGCTGAAATTAAGAATGCATTCAGAGCAAAGGCAATGGAGTTCCACCCAGACCAGAACCAAGATAATAAAGAGGCTGCTGAAGCGAAGTTTAAAGAGGTGATGACGTCCTATGAGGCTATTAAGTTGGAAAGAAAGAACGGGAGTTCATAA 750 43.07 MSEGKNMREDDNEKGSDNNPWARSNGQYEEKGEGMRLWGIFLFSLIGATVTTFAVGQFRRTAGWFYTQFARSQSSRNGATGSSFRSSFQEEAWKRYNRRMQEEYEEEMERVERIKRMQSVFNRERNKYKRSYESWRENGEGPYHQHFQRDDWYWKTDTSYKYQRANAREIPRDRTSASYPLSHHYLTLGLDRTRAKPYTEAEIKNAFRAKAMEFHPDQNQDNKEAAEAKFKEVMTSYEAIKLERKNGSS* 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6978723 6992744 + Vvi18g601 Vvi18g601 780304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g601 249 PRINTS DnaJ domain signature 207 222 IPR001623 -
Vvi18g601 249 PRINTS DnaJ domain signature 225 245 IPR001623 -
Vvi18g601 249 Pfam DnaJ domain 184 244 IPR001623 -
Vvi18g601 249 Gene3D DnaJ domain 179 247 IPR036869 -
Vvi18g601 249 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 11 247 - -
Vvi18g601 249 SMART dnaj_3 182 245 IPR001623 -
Vvi18g601 249 ProSiteProfiles dnaJ domain profile. 183 245 IPR001623 -
Vvi18g601 249 MobiDBLite consensus disorder prediction 1 26 - -
Vvi18g601 249 SUPERFAMILY Chaperone J-domain 179 241 IPR036869 -
Vvi18g601 249 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 11 247 - -
Vvi18g601 249 MobiDBLite consensus disorder prediction 1 17 - -
Vvi18g601 249 CDD DnaJ 184 238 IPR001623 -
Vvi18g601 249 Coils Coil 97 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g601 - - - vvi:100248937 506.908
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g601 . Blo12g01002 . Bda03g00156 . Bpe04g00138 . . Cmo05g00122 Cmo12g00554 . . . Car12g00558 . . Cpe07g00535 Bhi04g00466 . . . . . Lcy13g2158 Cla08g01645 . . . . . Cre08g1620 . Cone7ag1314 Cone17ag0906 Cone20ag0249 . . . Cme03g02129 . . . . . . . . . . . Cma12g00617 Cma05g00120 Car05g00102 . Cpe11g00104 . . . . . . . . . . . . . . . Lsi08g01553 Csa02g01866 Chy03g01619 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007061 3 2 2 0 2 0 2 0 0 1 1 0 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 37