Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g606 ATGGGTATTGATGACAATGGTAATATGGGGTTTCCAAATACAAGTCAGAGTATTTTGAATTGCCCATCTTCAGGGATGAACACACATCCAATCTCTGAGAAGGTTACAGGAATGACAATGAGCTCGGCGTCCATGTATAAATCTTCAAATGGAGGAGACCCTTTCTTTGGTTCTGGTTGGGATCCCATTGTGTCCTTAAGTCAGAATGAGAATTTTGGAGGGTCTTCAATGGTTTCTCACAGTGAGTTTGCTAATTCTGCTTACCCTGTTGTACTGGAAAATCAGGGAATTGGTAGCACCCCCCACCTTGTTCTCTACCCATCTAATTCAAGTCTAGTAGAGATGGTGCCGAAGCTTCCATGCTTTGGCAGTGGGAGTTTCTCCGAAATGGTTGCTTCGTTTGGCCTACCTGAGTGTGGCCAGACTGCTAATTCTGGGTGCCCTCCAAATTTTCCCCCAAACAAGGAGGGTCTCACTGAGAAAAGCTTAAATGGTGCACAATCTCAAGAGGGCCACCAAATTTCAGAAGGCGATGCCGTGGATGCTTCACCTAGTGGAAAGAGAAGAAAAAGTTCCTTTGATCCTCGTCCTCCATTGAATACCAGCAAGAGTGCTGATGGAGAACAACCAAAGGGTCTCCCTTGGGAAAATTCTGAGTTTTCAAAAGAACAAGAAGAGAAGAAACTAAAGATTGATCAAAACATGAGTCCAAATTTACGTGGTAAGCAACCAAATAAACATGCTAAAGACAATTCTAGCAATGGAGAAGCTCCTAAAGAAAATTACATTCACGTGAGGGCCAGAAGGGGCCAGGCGACTAATAGTCACAGCCTTGCTGAAAGGGTCAGAAGAGAAAAGATCAGTGAGCGTATGAGACTGCTTCAAGAACTTGTTCCAGGATGTAATAAGATTACTGGGAAGGCAGTAATGCTTGATGAGATTATCAATTATGTACAGTCACTGCAACAACAGGTTGAGTTTCTGTCAATGAAACTTGCCACTGTCAATCCAGAACTGAACATTGATATAGAACGACTTCTATCGAAAGATATTCTTAATTCACGGGGTGGCAGTACATCTGTTCTTGGGTTTGGTCCAGGAATGAGCTCTTCTCATCCTTACCCGCATGGAATTTCCCAGGGAACCTTGCCAGGTATCCCGACTCCACAATTTCATTCCACTCAGGCTGTATGGGATGGTGAACTCCAAAGTCTTCTCCAAATGGGATTTGATTCTAACCCATCTAGCAACAATCTGGGAACAAATGCAGGCCGCTCAAAACTGGAGCTATAG 1293 43.85 MGIDDNGNMGFPNTSQSILNCPSSGMNTHPISEKVTGMTMSSASMYKSSNGGDPFFGSGWDPIVSLSQNENFGGSSMVSHSEFANSAYPVVLENQGIGSTPHLVLYPSNSSLVEMVPKLPCFGSGSFSEMVASFGLPECGQTANSGCPPNFPPNKEGLTEKSLNGAQSQEGHQISEGDAVDASPSGKRRKSSFDPRPPLNTSKSADGEQPKGLPWENSEFSKEQEEKKLKIDQNMSPNLRGKQPNKHAKDNSSNGEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNIDIERLLSKDILNSRGGSTSVLGFGPGMSSSHPYPHGISQGTLPGIPTPQFHSTQAVWDGELQSLLQMGFDSNPSSNNLGTNAGRSKLEL* 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7033470 7037456 - Vvi18g606 Vvi18g606 780309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g606 430 CDD bHLH_AtBPE_like 261 346 - -
Vvi18g606 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 338 IPR036638 GO:0046983
Vvi18g606 430 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 12 430 IPR024097 GO:0006355
Vvi18g606 430 SMART finulus 277 327 IPR011598 GO:0046983
Vvi18g606 430 MobiDBLite consensus disorder prediction 145 258 - -
Vvi18g606 430 MobiDBLite consensus disorder prediction 160 174 - -
Vvi18g606 430 MobiDBLite consensus disorder prediction 409 430 - -
Vvi18g606 430 MobiDBLite consensus disorder prediction 8 32 - -
Vvi18g606 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 321 IPR011598 GO:0046983
Vvi18g606 430 Gene3D - 268 343 IPR036638 GO:0046983
Vvi18g606 430 Pfam Helix-loop-helix DNA-binding domain 274 322 IPR011598 GO:0046983
Vvi18g606 430 MobiDBLite consensus disorder prediction 1 32 - -
Vvi18g606 430 MobiDBLite consensus disorder prediction 409 424 - -
Vvi18g606 430 MobiDBLite consensus disorder prediction 218 233 - -
Vvi18g606 430 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 12 430 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14345 PF00010 HLH 4.60E-06 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g606 - - vvi:100247194 872.463