Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g607 ATGCCATTCCAATCAATTGATGCAATTGCAGTTTATCTGGGGGGGTATGATATGGAAGAGAAAGCTGCAAGAGCTTACGATCTGGCGGCCCTCAAATACTGGGGACCTTCTACTCATATCAACTTCCCGTTAGAAAATTACCAAGAAGAACTCGAAGAAATGAAGAACATGAGCCGCCAGGAATATGTTGCTCATCTGAGAAGGAAAAGCAGTGGATTCTCAAGAGGGGCTTCAATGTATAGAGGAGTGACAAGGCATCATCAACATGGAAGATGGCAGGCTCGGATTGGGAGGGTTGCTGGAAACAAGGACCTTTATCTCGGGACATTCAGTACCCAAGAGGAAGCAGCTGAAGCTTATGATGTTGCTGCTATTAAGTTCCGAGGGGTAAATGCAGTCACCAACTTTGATATTACACGATATGATGTGGAAAGAATCACAGCCAGCAATACTTTGATTGCTGGAGAGCTTGCAAAGCGAAGCAAAGGGAAAGAACCAAGCCGGGAGGCCATTGATTACAACCCACCTCAGAACAGTGGGGAGGCTATTCAATCTGAAAAAGCTAGCCCAGATAAAACTGGCCCTGCAATGCTGTTTGCAAAGCCTCCATTAGCATCAAAATTGATGGGGCCTGCAAGCGCACTCAGTTCATGGATCCCAACATCCCAGCTGAGGACTGCTGCAGTTTCCATGGCTCACTTGCCCCTTTTTGCTGCTTGGAATGATACCTAA 732 46.58 MPFQSIDAIAVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQEELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDITRYDVERITASNTLIAGELAKRSKGKEPSREAIDYNPPQNSGEAIQSEKASPDKTGPAMLFAKPPLASKLMGPASALSSWIPTSQLRTAAVSMAHLPLFAAWNDT* 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7050227 7052300 - Vvi18g607 Vvi18g607 780310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g607 243 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Vvi18g607 243 PRINTS Ethylene responsive element binding protein signature 119 139 IPR001471 GO:0003700|GO:0006355
Vvi18g607 243 SUPERFAMILY DNA-binding domain 78 138 IPR016177 GO:0003677
Vvi18g607 243 SMART rav1_2 4 49 IPR001471 GO:0003700|GO:0006355
Vvi18g607 243 SMART rav1_2 79 143 IPR001471 GO:0003700|GO:0006355
Vvi18g607 243 MobiDBLite consensus disorder prediction 157 196 - -
Vvi18g607 243 MobiDBLite consensus disorder prediction 172 186 - -
Vvi18g607 243 SUPERFAMILY DNA-binding domain 9 45 IPR016177 GO:0003677
Vvi18g607 243 Coils Coil 44 64 - -
Vvi18g607 243 Pfam AP2 domain 80 129 IPR001471 GO:0003700|GO:0006355
Vvi18g607 243 CDD AP2 78 139 IPR001471 GO:0003700|GO:0006355
Vvi18g607 243 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT ISOFORM X1 10 188 - -
Vvi18g607 243 ProSiteProfiles AP2/ERF domain profile. 1 43 IPR001471 GO:0003700|GO:0006355
Vvi18g607 243 Gene3D AP2/ERF domain 79 139 IPR036955 GO:0003700|GO:0006355
Vvi18g607 243 Gene3D AP2/ERF domain 7 45 IPR036955 GO:0003700|GO:0006355
Vvi18g607 243 ProSiteProfiles AP2/ERF domain profile. 79 137 IPR001471 GO:0003700|GO:0006355
Vvi18g607 243 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10 188 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14346 PF00847 AP2 1.00E-10 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g607 K09285 - vvi:100252316 359.762